Janos K. Lanyi

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http://www.faculty.uci.edu/profile.cfm?faculty_id=2216

Articles in Scholarly Journals [Incomplete List]

  1. Xanthorhodopsin: Proton pump with a carotenoid antenna
    Cellular and Molecular Life Sciences, vol. 64, no. 18, pp. 2323–2328, 2007
  2. Structural Changes in the L Photointermediate of Bacteriorhodopsin
    Journal of Molecular Biology, vol. 365, no. 5, pp. 1379–1392, 2007
  3. Electron Paramagnetic Resonance Study of Structural Changes in the O Photointermediate of Bacteriorhodopsin
    Journal of Molecular Biology, vol. 366, no. 3, pp. 790–805, 2007
  4. Bacteriorhodopsin photocycle at cryogenic temperatures reveals distributed barriers of conformational substates
    Proceedings of the National Academy of Sciences, vol. 104, no. 23, pp. 9621–9626, 2007
  5. Studies of the Bacteriorhodopsin Photocycle without the Use of Light: Clues to Proton Transfer Coupled Reactions
    Journal of Molecular Microbiology and Biotechnology, vol. 12, no. 3-4, pp. 210–217, 2007
  6. pH-Dependent Transitions in Xanthorhodopsin†
    Photochemistry and Photobiology, vol. 82, no. 6, p. 1406, 2006
  7. Biochemistry, vol. 45, no. 36, pp. 10998–11004, 2006
  8. Biochemistry, vol. 45, no. 39, pp. 12003–12010, 2006
  9. The Journal of Physical Chemistry A, vol. 110, no. 7, pp. 2318–2321, 2006
  10. Proton transfers in the bacteriorhodopsin photocycle
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1757, no. 8, pp. 1012–1018, 2006
  11. Functions of carotenoids in xanthorhodopsin and archaerhodopsin, from action spectra of photoinhibition of cell respiration
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1757, no. 12, pp. 1649–1656, 2006
  12. Biochemistry, vol. 44, no. 32, pp. 10828–10838, 2005
  13. Xanthorhodopsin: A Proton Pump with a Light-Harvesting Carotenoid Antenna
    Science, vol. 309, no. 5743, pp. 2061–2064, 2005
  14. Proton binding within a membrane protein by a protonated water cluster
    Proceedings of the National Academy of Sciences, vol. 102, no. 10, pp. 3633–3638, 2005
  15. X-ray diffraction of bacteriorhodopsin photocycle intermediates (Review)
    Molecular Membrane Biology, vol. 21, no. 3, pp. 143–150, 2004
  16. Bacteriorhodopsin
    Annual Review of Physiology, vol. 66, no. 1, pp. 665–688, 2004
  17. Biochemistry, vol. 43, no. 6, pp. 1648–1655, 2004
  18. Biochemistry, vol. 43, no. 1, pp. 3–8, 2004
  19. What is the real crystallographic structure of the L photointermediate of bacteriorhodopsin?
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1658, no. 1-2, pp. 14–22, 2004
  20. Mechanism of Proton Transport in Bacteriorhodopsin from Crystallographic Structures of the K, L, M1, M2, and M2' Intermediates of the Photocycle
    Journal of Molecular Biology, vol. 328, no. 2, pp. 439–450, 2003
  21. Crystallographic Structures of the M and N Intermediates of Bacteriorhodopsin: Assembly of a Hydrogen-bonded Chain of Water Molecules Between Asp-96 and the Retinal Schiff Base
    Journal of Molecular Biology, vol. 330, no. 3, pp. 553–570, 2003
  22. Biochemistry, vol. 42, no. 21, pp. 6582–6587, 2003
  23. Biochemistry, vol. 41, no. 20, pp. 6495–6503, 2002
  24. Biochemistry, vol. 41, no. 17, pp. 5348–5358, 2002
  25. Crystallographic Structure of the K Intermediate of Bacteriorhodopsin: Conservation of Free Energy after Photoisomerization of the Retinal
    Journal of Molecular Biology, vol. 321, no. 4, pp. 715–726, 2002
  26. Conformational change of the E-F interhelical loop in the M photointermediate of bacteriorhodopsin
    Journal of Molecular Biology, vol. 317, no. 3, pp. 471–478, 2002
  27. Crystal structure of the D85S mutant of bacteriorhodopsin: model of an O-like photocycle intermediate
    Journal of Molecular Biology, vol. 313, no. 3, pp. 615–628, 2001
  28. Proton pumps: mechanism of action and applications
    Trends in Biotechnology, vol. 19, no. 4, pp. 140–144, 2001
  29. Bacteriorhodopsin
    Current Opinion in Structural Biology, vol. 11, no. 4, pp. 415–419, 2001
  30. Biochemistry, vol. 40, no. 38, pp. 11308–11317, 2001
  31. Biochemistry, vol. 40, no. 46, pp. 13906–13914, 2001
  32. The 54th Annual Meeting and Symposium of the Society of General Physiologists: Structures and Mechanisms of Channels and Transport Proteins (ORGANIZED BY JANOS K. LANYI and CHRIS MILLER)
    The Journal of General Physiology, vol. 117, no. 3, pp. 195–202, 2001
  33. Photochemical Reaction Cycle and Proton Transfers in Neurospora Rhodopsin
    Journal of Biological Chemistry, vol. 276, no. 35, pp. 32495–32505, 2001
  34. Crystal Structure of Sensory Rhodopsin II at 2.4 Angstroms: Insights into Color Tuning and Transducer Interaction
    Science, vol. 293, no. 5534, pp. 1499–1503, 2001
  35. Cytoplasmic surface structure of bacteriorhodopsin consisting of interhelical loops and C-terminal alpha helix, modified by a variety of environmental factors as studied by 13C-NMR
    European Journal of Biochemistry, vol. 268, no. 8, pp. 2218–2228, 2001
  36. Biochemistry (Moscow), vol. 66, no. 11, pp. 1192–1196, 2001
  37. Local and distant protein structural changes on photoisomerization of the retinal in bacteriorhodopsin
    Proceedings of the National Academy of Sciences, vol. 97, no. 9, pp. 4643–4648, 2000
  38. Biochemistry, vol. 39, no. 5, pp. 938–945, 2000
  39. Biochemistry, vol. 39, no. 47, pp. 14472–14480, 2000
  40. Coupling photoisomerization of retinal to directional transport in bacteriorhodopsin
    Journal of Molecular Biology, vol. 300, no. 5, pp. 1237–1255, 2000
  41. Light-induced Rotation of a Transmembrane a-Helix in Bacteriorhodopsin,
    Journal of Molecular Biology, vol. 304, no. 5, pp. 715–721, 2000
  42. Bacteriorhodopsin
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1460, no. 1, pp. 1–3, 2000
  43. Crystallographic studies of the conformational changes that drive directional transmembrane ion movement in bacteriorhodopsin
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1459, no. 2-3, pp. 339–345, 2000
  44. Protein conformational changes in the bacteriorhodopsin photocycle
    Journal of Molecular Biology, vol. 287, no. 1, pp. 145–161, 1999
  45. Structure of bacteriorhodopsin at 1.55 Å resolution
    Journal of Molecular Biology, vol. 291, no. 4, pp. 899–911, 1999
  46. Progress toward an explicit mechanistic model for the light-driven pump, bacteriorhodopsin
    FEBS Letters, vol. 464, no. 3, pp. 103–107, 1999
  47. Biochemistry, vol. 38, no. 21, pp. 6855–6861, 1999
  48. Biochemistry, vol. 38, no. 29, pp. 9449–9455, 1999
  49. Biochemistry, vol. 38, no. 30, pp. 9676–9683, 1999
  50. Singular value decomposition with self-modeling applied to determine bacteriorhodopsin intermediate spectra: Analysis of simulated data
    Proceedings of the National Academy of Sciences, vol. 96, no. 8, pp. 4408–4413, 1999
  51. Intermediate spectra and photocycle kinetics of the Asp96 right-arrow Asn mutant bacteriorhodopsin determined by singular value decomposition with self-modeling
    Proceedings of the National Academy of Sciences, vol. 96, no. 8, pp. 4414–4419, 1999
  52. Structural Changes in Bacteriorhodopsin During Ion Transport at 2 Angstrom Resolution
    Science, vol. 286, no. 5438, pp. 255–260, 1999
  53. Proton Transfer Pathways in Bacteriorhodopsin at 2.3 Angstrom Resolution
    Science, vol. 280, no. 5371, pp. 1934–1937, 1998
  54. Photoelectrochemical Verification of Proton-Releasing Groups in Bacteriorhodopsin
    Photochemistry and Photobiology, vol. 68, no. 3, p. 400, 1998
  55. Biochemistry, vol. 37, no. 8, pp. 2496–2506, 1998
  56. Biochemistry, vol. 37, no. 6, pp. 1559–1564, 1998
  57. Biochemistry, vol. 37, no. 11, pp. 3982–3993, 1998
  58. Biochemistry, vol. 37, no. 28, pp. 9889–9893, 1998
  59. Journal of the American Chemical Society, vol. 120, no. 23, pp. 5828–5829, 1998
  60. Photoelectric response of halorhodopsin from Natronobacterium pharaonis
    Bioelectrochemistry and Bioenergetics, vol. 46, no. 2, pp. 289–292, 1998
  61. Understanding Structure and Function in the Light-Driven Proton Pump Bacteriorhodopsin
    Journal of Structural Biology, vol. 124, no. 2-3, pp. 164–178, 1998
  62. The local-access mechanism of proton transport by bacteriorhodopsin
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1365, no. 1-2, pp. 17–22, 1998
  63. Evidence of local conformational fluctuations and changes in bacteriorhodopsin, dependent on lipids, detergents and trimeric structure, as studied by 13C NMR
    Biochimica et Biophysica Acta (BBA) - Biomembranes, vol. 1375, no. 1-2, pp. 84–92, 1998
  64. Transient channel-opening in bacteriorhodopsin: an EPR study
    Journal of Molecular Biology, vol. 273, no. 5, pp. 951–957, 1997
  65. The Journal of Physical Chemistry B, vol. 101, no. 10, pp. 1930–1933, 1997
  66. Biochemistry, vol. 36, no. 17, pp. 5134–5141, 1997
  67. Biochemistry, vol. 36, no. 18, pp. 5493–5498, 1997
  68. Biochemistry, vol. 36, no. 40, pp. 12282–12287, 1997
  69. Biochemistry, vol. 36, no. 39, pp. 11583–11590, 1997
  70. A local electrostatic change is the cause of the large-scale protein conformation shift in bacteriorhodopsin
    Proceedings of the National Academy of Sciences, vol. 94, no. 10, pp. 5040–5044, 1997
  71. Mechanism of Ion Transport across Membranes. BACTERIORHODOPSIN AS A PROTOTYPE FOR PROTON PUMPS
    Journal of Biological Chemistry, vol. 272, no. 50, pp. 31209–31212, 1997
  72. Structure of the N intermediate of bacteriorhodopsin revealed by x-ray diffraction
    Proceedings of the National Academy of Sciences, vol. 93, no. 4, pp. 1386–1390, 1996
  73. Determination of the transiently lowered pKa of the retinal Schiff base during the photocycle of bacteriorhodopsin
    Proceedings of the National Academy of Sciences, vol. 93, no. 4, pp. 1731–1734, 1996
  74. Biochemistry, vol. 35, no. 13, pp. 4063–4068, 1996
  75. Biochemistry, vol. 35, no. 13, pp. 4054–4062, 1996
  76. Biochemistry, vol. 35, no. 20, pp. 6308–6312, 1996
  77. Biochemistry, vol. 35, no. 21, pp. 6604–6611, 1996
  78. Biochemistry, vol. 35, no. 23, pp. 7520–7527, 1996
  79. Biochemistry, vol. 35, no. 45, pp. 14244–14250, 1996
  80. Biochemistry, vol. 35, no. 33, pp. 10807–10814, 1996
  81. Biochemistry, vol. 35, no. 48, pp. 15461–15466, 1996
  82. Biochemistry, vol. 35, no. 50, pp. 16048–16054, 1996
  83. The Journal of Physical Chemistry, vol. 100, no. 6, pp. 2391–2398, 1996
  84. The Journal of Physical Chemistry, vol. 100, no. 24, pp. 10479–10481, 1996
  85. Shuttling between two protein conformations: the common mechanism for sensory transduction and ion transport
    Current Opinion in Cell Biology, vol. 8, no. 4, pp. 452–457, 1996
  86. Biochemistry, vol. 34, no. 2, pp. 577–582, 1995
  87. Biochemistry, vol. 34, no. 21, pp. 7088–7093, 1995
  88. Biochemistry, vol. 34, no. 39, pp. 12903–12911, 1995
  89. Bacteriorhodopsin: a paradigm for proton pumps?
    Biophysical Chemistry, vol. 56, no. 1-2, pp. 143–151, 1995
  90. Journal of Physical Chemistry, vol. 99, no. 19, pp. 7776–7781, 1995
  91. Journal of Physical Chemistry, vol. 99, no. 24, pp. 10052–10055, 1995
  92. Journal of the American Chemical Society, vol. 117, no. 7, pp. 2118–2119, 1995
  93. Bacteriorhodopsin as a model for proton pumps
    Nature, vol. 375, no. 6531, Article ID 375461a0, 2 pages, 1995
  94. Glutamic Acid 204 is the Terminal Proton Release Group at the Extracellular Surface of Bacteriorhodopsin
    Journal of Biological Chemistry, vol. 270, no. 45, pp. 27122–27126, 1995
  95. Energy coupling in an ion pump *1The reprotonation switch of bacteriorhodopsin
    Journal of Molecular Biology, vol. 243, no. 4, pp. 621–638, 1994
  96. The Proton Transfers in the Cytoplasmic Domain of Bacteriorhodopsin are Facilitated by a Cluster of Interacting Residues
    Journal of Molecular Biology, vol. 239, no. 3, pp. 401–414, 1994
  97. Biochemistry, vol. 33, no. 7, pp. 1713–1717, 1994
  98. Biochemistry, vol. 33, no. 11, pp. 3178–3184, 1994
  99. Biochemistry, vol. 32, no. 8, pp. 1981–1990, 1993
  100. Biochemistry, vol. 32, no. 38, pp. 10239–10248, 1993
  101. Pathways of proton transfer in the light-driven pump bacteriorhodopsin
    Experientia, vol. 49, no. 6-7, pp. 514–517, 1993
  102. Trimeric mutant bacteriorhodopsin, D85N, shows a monophasic CD spectrum
    FEBS Letters, vol. 333, no. 1-2, pp. 111–113, 1993
  103. Proton translocation mechanism and energetics in the light-driven pump bacteriorhodopsin
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1183, no. 2, pp. 241–261, 1993
  104. Effects of Genetic Replacements of Charged and H-Bonding Residues in the Retinal Pocket on Ca2+ Binding to Deionized Bacteriorhodopsin
    Proceedings of the National Academy of Sciences, vol. 90, no. 4, pp. 1445–1449, 1993
  105. Influence of the size and protonation state of acidic residue 85 on the absorption spectrum and photoreaction of the bacteriorhodopsin chromophore
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 1099, no. 1, pp. 102–110, 1992
  106. Introduction
    Journal of Bioenergetics and Biomembranes, vol. 24, no. 2, pp. 137–138, 1992
  107. Proton transfer and energy coupling in the bacteriorhodopsin photocycle
    Journal of Bioenergetics and Biomembranes, vol. 24, no. 2, pp. 169–179, 1992
  108. Biochemistry, vol. 31, no. 19, pp. 4684–4690, 1992
  109. Biochemistry, vol. 31, no. 36, pp. 8535–8543, 1992
  110. Biochemistry, vol. 30, no. 20, pp. 5008–5015, 1991
  111. Biochemistry, vol. 30, no. 20, pp. 5016–5022, 1991
  112. Biochemistry, vol. 30, no. 29, pp. 7165–7171, 1991
  113. Biochemistry, vol. 29, no. 9, pp. 2241–2250, 1990
  114. Biochemistry, vol. 29, no. 15, pp. 3798–3804, 1990
  115. Biochemistry, vol. 29, no. 29, pp. 6858–6865, 1990
  116. Anion binding to the chloride pump, halorhodopsin, and its implications for the transport mechanism
    FEBS Letters, vol. 265, no. 1-2, pp. 1–6, 1990
  117. Biochemistry, vol. 28, no. 4, pp. 1656–1661, 1989
  118. Biochemistry, vol. 28, no. 4, pp. 1662–1666, 1989
  119. Biochemistry, vol. 28, no. 12, pp. 5165–5172, 1989
  120. Biochemistry, vol. 28, no. 12, pp. 5172–5178, 1989
  121. Halorhodopsin: A Light-Driven Active Chloride Transport System
    Annals of the New York Academy of Sciences, vol. 574, no. 1 Bicarbonate, , pp. 11–19, 1989
  122. Biochemistry, vol. 25, no. 6, pp. 1465–1470, 1986
  123. Biochemistry, vol. 25, no. 14, pp. 4163–4167, 1986
  124. Biochemistry, vol. 25, no. 21, pp. 6706–6711, 1986
  125. Current-voltage characteristics of planar lipid membranes with attached Halobacterium cell-envelope vesicles
    Biochimica et Biophysica Acta (BBA) - Biomembranes, vol. 858, no. 1, pp. 92–98, 1986
  126. Effects of arginine modification on the photocycle of halorhodopsin*1
    Archives of Biochemistry and Biophysics, vol. 248, no. 2, pp. 532–539, 1986
  127. An NADH:Quinone oxidoreductase of the halotolerant bacterium Ba1 is specifically dependent on sodium ions*1
    Archives of Biochemistry and Biophysics, vol. 244, no. 2, pp. 766–772, 1986
  128. ESR studies of light-dependent volume changes in cell envelope vesicles from Halobacterium halobium
    Biochimica et Biophysica Acta (BBA) - Bioenergetics, vol. 809, no. 1, pp. 66–73, 1985
  129. Nature of the principal photointermediate of halorhodopsin
    Biochemical and Biophysical Research Communications, vol. 122, no. 1, pp. 91–96, 1984
  130. Light-dependent trans to cis isomerization of the retinal in halorhodopsin
    FEBS Letters, vol. 175, no. 2, pp. 337–342, 1984