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Articles in Scholarly Journals [Incomplete List]

1. The environmental fate of organic pollutants through the global microbial metabolism
   Molecular Systems Biology, vol. 3, Article ID msb4100156, 2007
2. Phylogeny-independent detection of functional residues
   Bioinformatics, vol. 22, no. 12, pp. 1440–1448, 2006
3. TSEMA: interactive prediction of protein pairings between interacting families
   Nucleic Acids Research, vol. 34, no. Web Server, pp. W315–W319, 2006
4. TreeDet: a web server to explore sequence space
   Nucleic Acids Research, vol. 34, no. Web Server, pp. W110–W115, 2006
5. The proteome: structure, function and evolution
   Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 361, no. 1467, pp. 441–451, 2006
6. EVAcon: a protein contact prediction evaluation service
   Nucleic Acids Research, vol. 33, no. Web Server, pp. W347–W351, 2005
7. Assessing Protein Co-evolution in the Context of the Tree of Life Assists in the Prediction of the Interactome
   Journal of Molecular Biology, vol. 352, no. 4, pp. 1002–1015, 2005
8. MetaRouter: bioinformatics for bioremediation
   Nucleic Acids Research, vol. 33, no. Database issue, pp. D588–D592, 2004
9. Automated prediction of protein function and detection of functional sites from structure
   Proceedings of the National Academy of Sciences, vol. 101, no. 41, pp. 14754–14759, 2004
10. The single tryptophan of the PsbQ protein of photosystem II is at the end of a 4-alpha-helical bundle domain
    European Journal of Biochemistry, vol. 270, no. 19, pp. 3916–3927, 2003
11. EVA: evaluation of protein structure prediction servers
    Nucleic Acids Research, vol. 31, no. 13, pp. 3311–3315, 2003
12. Automatic Methods for Predicting Functionally Important Residues
    Journal of Molecular Biology, vol. 326, no. 4, pp. 1289–1302, 2003
13. The organization of the microbial biodegradation network from a systems-biology perspective
    EMBO reports, vol. 4, no. 10, Article ID embor933, 5 pages, 2003
14. A neural network approach to evaluate fold recognition results
    Proteins: Structure, Function, and Genetics, vol. 50, no. 4, pp. 600–608, 2003
15. CAFASP3 in the spotlight of EVA
    Proteins: Structure, Function, and Genetics, vol. 53, no. S6, pp. 548–560, 2003
16. The Oligomerization Domain of VP3, the Scaffolding Protein of Infectious Bursal Disease Virus, Plays a Critical Role in Capsid Assembly
    Journal of Virology, vol. 77, no. 11, pp. 6438–6449, 2003
17. CAFASP2: The second critical assessment of fully automated structure prediction methods
    Proteins: Structure, Function, and Genetics, vol. 45, no. S5, pp. 171–183, 2002
18. In silico two-hybrid system for the selection of physically interacting protein pairs
    Proteins: Structure, Function, and Genetics, vol. 47, no. 2, pp. 219–227, 2002
19. Prediction of protein-protein interaction sites in heterocomplexes with neural networks
    European Journal of Biochemistry, vol. 269, no. 5, pp. 1356–1361, 2002
20. Computational methods for the prediction of protein interactions
    Current Opinion in Structural Biology, vol. 12, no. 3, pp. 368–373, 2002
21. EVA: continuous automatic evaluation of protein structure prediction servers
    Bioinformatics, vol. 17, no. 12, pp. 1242–1243, 2001
22. Threading structural model of the manganese-stabilizing protein PsbO reveals presence of two possible ?-sandwich domains
    Proteins: Structure, Function, and Genetics, vol. 45, no. 4, pp. 372–381, 2001
23. A platform for integrating threading results with protein family analyses
    Bioinformatics, vol. 15, no. 12, pp. 1062–1063, 1999
24. Correlated mutations contain information about protein-protein interaction
    Journal of Molecular Biology, vol. 271, no. 4, pp. 511–523, 1997