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Articles in Scholarly Journals [Incomplete List]

1. Annotation-based distance measures for patient subgroup discovery in clinical microarray studies
   Bioinformatics, vol. 23, no. 17, pp. 2256–2264, 2007
2. Nested effects models for high-dimensional phenotyping screens
   Bioinformatics, vol. 23, no. 13, pp. i305–i312, 2007
3. Gene Expression Signatures for Tumor Progression, Tumor Subtype, and Tumor Thickness in Laser-Microdissected Melanoma Tissues
   Clinical Cancer Research, vol. 13, no. 3, pp. 806–815, 2007
4. Compensating for Unknown Confounders in Microarray Data Analysis Using Filtered Permutations
   Journal of Computational Biology, vol. 14, no. 5, pp. 669–681, 2007
5. A Biologic Definition of Burkitt's Lymphoma from Transcriptional and Genomic Profiling
   New England Journal of Medicine, vol. 354, no. 23, pp. 2419–2430, 2006
6. Expression of Late Cell Cycle Genes and an Increased Proliferative Capacity Characterize Very Early Relapse of Childhood Acute Lymphoblastic Leukemia
   Clinical Cancer Research, vol. 12, no. 15, pp. 4553–4561, 2006
7. Journal of Bioinformatics and Computational Biology, vol. 4, no. 3, p. 693, 2006
8. BMC Bioinformatics, vol. 7, no. 1, p. 388, 2006
9. BMC Bioinformatics, vol. 7, no. 1, p. 282, 2006
10. OrderedList--a bioconductor package for detecting similarity in ordered gene lists
    Bioinformatics, vol. 22, no. 18, pp. 2315–2316, 2006
11. Non-transcriptional pathway features reconstructed from secondary effects of RNA interference
    Bioinformatics, vol. 21, no. 21, pp. 4026–4032, 2005
12. twilight; a Bioconductor package for estimating the local false discovery rate
    Bioinformatics, vol. 21, no. 12, pp. 2921–2922, 2005
13. Molecular decomposition of complex clinical phenotypes using biologically structured analysis of microarray data
    Bioinformatics, vol. 21, no. 9, pp. 1971–1978, 2005
14. BMC Bioinformatics, vol. 6, no. 1, p. 211, 2005
15. Detecting Common Gene Expression Patterns in Multiple Cancer Outcome Entities
    Biomedical Microdevices, vol. 7, no. 3, pp. 247–251, 2005
16. A stochastic downhill search algorithm for estimating the local false discovery rate
    IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 1, no. 3, pp. 98–108, 2004
17. Finding disease specific alterations in the co-expression of genes
    Bioinformatics, vol. 20, no. suppl_1, pp. i194–i199, 2004
18. Expression profiling of human idiopathic dilated cardiomyopathy
    Cardiovascular Research, vol. 59, no. 2, pp. 400–411, 2003
19. A Novel Approach to Remote Homology Detection: Jumping Alignments
    Journal of Computational Biology, vol. 9, no. 5, pp. 747–760, 2002
20. Limits of homology detection by pairwise sequence comparison
    Bioinformatics, vol. 17, no. 4, pp. 338–342, 2001
21. Predicting the clinical status of human breast cancer by using gene expression profiles
    Proceedings of the National Academy of Sciences, vol. 98, no. 20, pp. 11462–11467, 2001
22. Role for E2F in Control of Both DNA Replication and Mitotic Functions as Revealed from DNA Microarray Analysis
    Molecular and Cellular Biology, vol. 21, no. 14, pp. 4684–4699, 2001
23. Statistics of large-scale sequence searching
    Bioinformatics, vol. 14, no. 3, pp. 279–284, 1998