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Articles in Scholarly Journals [Incomplete List]

1. Combining classical trait and microarray data to dissect transcriptional regulation: a case study
   Theoretical and Applied Genetics, vol. 116, no. 5, pp. 683–690, 2008
2. CmeR Functions as a Pleiotropic Regulator and Is Required for Optimal Colonization of Campylobacter jejuni In Vivo
   Journal of Bacteriology, vol. 190, no. 6, pp. 1879–1890, 2008
3. Duplicate gene expression in allopolyploid Gossypium reveals two temporally distinct phases of expression evolution
   BMC Biology, vol. 6, no. 1, p. 16, 2008
4. Spotted cotton oligonucleotide microarrays for gene expression analysis
   BMC Genomics, vol. 8, no. 1, p. 81, 2007
5. Global gene expression analysis of the shoot apical meristem of maize (Zea mays L.)
   The Plant Journal, vol. 52, no. 3, pp. 391–404, 2007
6. Exploring the Information in p-Values for the Analysis and Planning of Multiple-Test Experiments
   Biometrics, vol. 63, no. 2, pp. 483–495, 2007
7. Transcriptomic and Proteomic Analyses of Pericycle Cells of the Maize Primary Root
   PLANT PHYSIOLOGY, vol. 145, no. 3, pp. 575–588, 2007
8. Global transcriptional response of porcine mesenteric lymph nodes to Salmonella enterica serovar Typhimurium
   Genomics, vol. 90, no. 1, pp. 72–84, 2007
9. Pooling mRNA in microarray experiments and its effect on power
   Bioinformatics, vol. 23, no. 10, pp. 1217–1224, 2007
10. Identification of differentially expressed gene categories in microarray studies using nonparametric multivariate analysis
    Bioinformatics, vol. 24, no. 2, pp. 192–201, 2007
11. Parallel Genome-Wide Expression Profiling of Host and Pathogen During Soybean Cyst Nematode Infection of Soybean
    Molecular Plant-Microbe Interactions, vol. 20, no. 3, pp. 293–305, 2007
12. Spatial Analysis of Arabidopsis thaliana Gene Expression in Response to Turnip mosaic virus Infection
    Molecular Plant-Microbe Interactions, vol. 20, no. 4, pp. 358–370, 2007
13. Developmental Transcript Profiling of Cyst Nematode Feeding Cells in Soybean Roots
    Molecular Plant-Microbe Interactions, vol. 20, no. 5, pp. 510–525, 2007
14. Distinct Biphasic mRNA Changes in Response to Asian Soybean Rust Infection
    Molecular Plant-Microbe Interactions, vol. 20, no. 8, pp. 887–899, 2007
15. Laser Microdissection of Narrow Sheath Mutant Maize Uncovers Novel Gene Expression in the Shoot Apical Meristem
    PLoS Genetics, vol. 3, no. 6, p. e101, 2007
16. Array-Based Genomic Comparative Hybridization Analysis of Field Strains of Mycoplasma hyopneumoniae
    Journal of Bacteriology, vol. 189, no. 22, pp. 7977–7982, 2007
17. A Novel Approach for Characterizing Expression Levels of Genes Duplicated by Polyploidy
    Genetics, vol. 173, no. 3, pp. 1823–1827, 2006
18. Transcriptional profiling of Mycoplasma hyopneumoniae during iron depletion using microarrays
    Microbiology, vol. 152, no. 4, pp. 937–944, 2006
19. All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents
    Proceedings of the National Academy of Sciences, vol. 103, no. 18, pp. 6805–6810, 2006
20. Scanning microarrays at multiple intensities enhances discovery of differentially expressed genes
    Bioinformatics, vol. 22, no. 15, pp. 1863–1870, 2006
21. Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a long oligonucleotide microarray
    Mammalian Genome, vol. 17, no. 7, pp. 777–789, 2006
22. Identifying differentially expressed genes in unreplicated multiple-treatment microarray timecourse experiments
    Computational Statistics & Data Analysis, vol. 50, no. 2, pp. 518–532, 2006
23. A Discussion of Statistical Methods for Design and Analysis of Microarray Experiments for Plant Scientists
    THE PLANT CELL ONLINE, vol. 18, no. 9, pp. 2112–2121, 2006
24. Selective transcriptional profiling for trait-based eQTL mapping
    Animal Genetics, vol. 37, no. s1, pp. 13–17, 2006
25. Stage-Specific Suppression of Basal Defense Discriminates Barley Plants Containing Fast- and Delayed-Acting Mla Powdery Mildew Resistance Alleles
    Molecular Plant-Microbe Interactions, vol. 19, no. 9, pp. 939–947, 2006
26. Gene Expression Programs during Shoot, Root, and Callus Development in Arabidopsis Tissue Culture
    PLANT PHYSIOLOGY, vol. 141, no. 2, pp. 620–637, 2006
27. Transcriptional Profiling of Mycoplasma hyopneumoniae during Heat Shock Using Microarrays
    Infection and Immunity, vol. 74, no. 1, pp. 160–166, 2006
28. Identifying Genes Associated with a Quantitative Trait or Quantitative Trait Locus via Selective Transcriptional Profiling
    Biometrics, vol. 62, no. 2, pp. 504–514, 2006
29. Discussion
    Journal of the American Statistical Association, vol. 101, no. 476, pp. 1332–1334, 2006
30. Estimating the Number of True Null Hypotheses From a Histogram of <I>p</I> Values
    Journal of Agricultural, Biological & Environmental Statistics, vol. 11, no. 3, pp. 337–356, 2006
31. Isolation, Characterization, and Pericycle-Specific Transcriptome Analyses of the Novel Maize Lateral and Seminal Root Initiation Mutant rum1
    PLANT PHYSIOLOGY, vol. 139, no. 3, pp. 1255–1267, 2005
32. Validation of a first-generation long-oligonucleotide microarray for transcriptional profiling in the pig
    Genomics, vol. 86, no. 5, pp. 618–625, 2005
33. Transcriptional profiling using a novel cDNA array identifies differential gene expression during porcine embryo elongation
    Molecular Reproduction and Development, vol. 71, no. 2, pp. 129–139, 2005
34. Genetic Regulation of Gene Expression During Shoot Development in Arabidopsis
    Genetics, vol. 172, no. 2, pp. 1155–1164, 2005
35. Quantitative Trait Loci Associated With Adventitious Shoot Formation in Tissue Culture and the Program of Shoot Development in Arabidopsis
    Genetics, vol. 167, no. 4, pp. 1883–1892, 2004
36. Controlling the Proportion of False Positives in Multiple Dependent Tests
    Genetics, vol. 166, no. 1, pp. 611–619, 2004
37. BarleyBase--an expression profiling database for plant genomics
    Nucleic Acids Research, vol. 33, no. Database issue, pp. D614–D618, 2004
38. Genomics, Prior Probability, and Statistical Tests of Multiple Hypotheses
    Genome Research, vol. 14, no. 6, pp. 997–1001, 2004
39. Interaction-Dependent Gene Expression in Mla-Specified Response to Barley Powdery Mildew
    THE PLANT CELL ONLINE, vol. 16, no. 9, pp. 2514–2528, 2004
40. Arabidopsis gene expression changes during cyst nematode parasitism revealed by statistical analyses of microarray expression profiles
    The Plant Journal, vol. 33, no. 5, pp. 911–921, 2003
41. Agrobacterium tumefaciens-Mediated Transformation of Maize Embryos Using a Standard Binary Vector System
    PLANT PHYSIOLOGY, vol. 129, no. 1, pp. 13–22, 2002
42. Testing for ordered means in a variation of the normal mixture model
    Journal of Statistical Planning and Inference, vol. 107, no. 1-2, pp. 143–153, 2002
43. Expression pattern of yeast sporulation: a case study for regulatory changes after yeast genome duplication
    Information Sciences, vol. 0, no. 1-2, p. 0, 2002
44. Testing the equality of distributions of random vectors with categorical components
    Computational Statistics & Data Analysis, vol. 37, no. 2, pp. 195–208, 2001
45. Order-Restricted Hypothesis Testing in a Variation of the Normal Mixture Model
    The Canadian Journal of Statistics / La Revue Canadienne de Statistique, vol. 27, no. 2, p. 383, 1999
46. Convergence Properties of the EM Algorithm in Constrained Parameter Spaces
    The Canadian Journal of Statistics / La Revue Canadienne de Statistique, vol. 27, no. 3, p. 639, 1999
47. Interval Mapping of Quantitative Trait Loci through Order-Restricted Inference
    Biometrics, vol. 54, no. 1, p. 74, 1998