Stephen Jacobsen

Articles in Scholarly Journals [Incomplete List]

  1. The SRA Methyl-Cytosine-Binding Domain Links DNA and Histone Methylation
    Current Biology, vol. 17, no. 4, pp. 379–384, 2007
  2. Role of RNA polymerase IV in plant small RNA metabolism
    Proceedings of the National Academy of Sciences, vol. 104, no. 11, pp. 4536–4541, 2007
  3. Epigenetic inheritance in plants
    Nature, vol. 447, no. 7143, Article ID nature05917, 6 pages, 2007
  4. Whole-Genome Analysis of Histone H3 Lysine 27 Trimethylation in Arabidopsis
    PLoS Biology, vol. 5, no. 5, p. e129, 2007
  5. RNAi, DRD1, and Histone Methylation Actively Target Developmentally Important Non-CG DNA Methylation in Arabidopsis
    PLoS Genetics, vol. 2, no. 6, p. e83, 2006
  6. Two-Step Recruitment of RNA-Directed DNA Methylation to Tandem Repeats
    PLoS Biology, vol. 4, no. 11, p. e363, 2006
  7. Methylation of tRNAAsp by the DNA Methyltransferase Homolog Dnmt2
    Science, vol. 311, no. 5759, pp. 395–398, 2006
  8. LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC
    Proceedings of the National Academy of Sciences, vol. 103, no. 13, pp. 5012–5017, 2006
  9. MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    Genome Research, vol. 16, no. 10, pp. 1276–1288, 2006
  10. Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1
    Nature Genetics, vol. 38, no. 6, Article ID ng1795, 4 pages, 2006
  11. Dissecting Arabidopsis thaliana DICER function in small RNA processing, gene silencing and DNA methylation patterning
    Nature Genetics, vol. 38, no. 6, Article ID ng1804, 4 pages, 2006
  12. Biochemistry, vol. 45, no. 10, pp. 3272–3284, 2006
  13. Plant genetics: Increased outcrossing in hothead mutants
    Nature, vol. 443, no. 7110, Article ID nature05251, 2006
  14. The Arabidopsis Chromatin-Modifying Nuclear siRNA Pathway Involves a Nucleolar RNA Processing Center
    Cell, vol. 126, no. 1, pp. 79–92, 2006
  15. An ARGONAUTE4-Containing Nuclear Processing Center Colocalized with Cajal Bodies in Arabidopsis thaliana
    Cell, vol. 126, no. 1, pp. 93–106, 2006
  16. Genome-wide High-Resolution Mapping and Functional Analysis of DNA Methylation in Arabidopsis
    Cell, vol. 126, no. 6, pp. 1189–1201, 2006
  17. DNA Methylation Profiling Identifies CG Methylation Clusters in Genes
    Current Biology, vol. 15, no. 2, pp. 154–159, 2005
  18. Corrigendum to ??Applications of DNA tiling arrays for whole-genome analysis?? [Genomics 85 (2005) 1?15]
    Genomics, vol. 85, no. 5, pp. 655–655, 2005
  19. Gardening the genome: DNA methylation in Arabidopsis thaliana
    Nature Reviews Genetics, vol. 6, no. 5, Article ID nrg1601, 9 pages, 2005
  20. Erratum: Gardening The Genome: DNA Methylation in Arabidopsis thaliana
    Nature Reviews Genetics, vol. 6, no. 7, Article ID nrg1664, 1 pages, 2005
  21. DDM1 Binds Arabidopsis Methyl-CpG Binding Domain Proteins and Affects Their Subnuclear Localization
    THE PLANT CELL ONLINE, vol. 17, no. 5, pp. 1549–1558, 2005
  22. Substrate Specificity and Kinetic Mechanism of Mammalian G9a Histone H3 Methyltransferase
    Journal of Biological Chemistry, vol. 279, no. 51, pp. 53248–53258, 2004
  23. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3
    The EMBO Journal, vol. 23, no. 21, Article ID 7600430, 9 pages, 2004
  24. One-Way Control of FWA Imprinting in Arabidopsis Endosperm by DNA Methylation
    Science, vol. 303, no. 5657, pp. 521–523, 2004
  25. RNA Silencing Genes Control de Novo DNA Methylation
    Science, vol. 303, no. 5662, pp. 1336–1336, 2004
  26. Small Interfering RNA-Induced Transcriptional Gene Silencing in Human Cells
    Science, vol. 305, no. 5688, pp. 1289–1292, 2004
  27. Mass spectrometry analysis of Arabidopsis histone H3 reveals distinct combinations of post-translational modifications
    Nucleic Acids Research, vol. 32, no. 22, pp. 6511–6518, 2004
  28. Genetic and Functional Diversification of Small RNA Pathways in Plants
    PLoS Biology, vol. 2, no. 5, p. e104, 2004
  29. Role of Arabidopsis ARGONAUTE4 in RNA-Directed DNA Methylation Triggered by Inverted Repeats
    Current Biology, vol. 14, no. 13, pp. 1214–1220, 2004
  30. Dimethylation of histone H3 lysine 9 is a critical mark for DNA methylation and gene silencing in Arabidopsis thaliana
    Chromosoma, vol. 112, no. 6, pp. 308–315, 2004
  31. Role of CG and Non-CG Methylation in Immobilization of Transposons in Arabidopsis
    Current Biology, vol. 13, no. 5, pp. 421–426, 2003
  32. ARGONAUTE4 Control of Locus-Specific siRNA Accumulation and DNA and Histone Methylation
    Science, vol. 299, no. 5607, pp. 716–719, 2003
  33. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes
    Proceedings of the National Academy of Sciences, vol. 99, no. 90004, pp. 16491–16498, 2002
  34. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis
    The EMBO Journal, vol. 21, no. 23, pp. 6549–6559, 2002
  35. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase
    Nature, vol. 416, no. 6880, pp. 556–560, 2002
  36. : blind men and elephants in development
    Trends in Plant Science, vol. 7, no. 11, pp. 487–491, 2002
  37. DEMETER, a DNA Glycosylase Domain Protein, Is Required for Endosperm Gene Imprinting and Seed Viability in Arabidopsis
    Cell, vol. 110, no. 1, pp. 33–42, 2002
  38. Role of the Arabidopsis DRM Methyltransferases in De Novo DNA Methylation and Gene Silencing
    Current Biology, vol. 12, no. 13, pp. 1138–1144, 2002
  39. Interplay between Two Epigenetic MarksDNA Methylation and Histone H3 Lysine 9 Methylation
    Current Biology, vol. 12, no. 16, pp. 1360–1367, 2002
  40. Plant Molecular Biology, vol. 46, no. 2, pp. 171–183, 2001
  41. CmC(A/T)GG DNA methylation in mature B cell lymphoma gene silencing
    Proceedings of the National Academy of Sciences, vol. 98, no. 18, pp. 10404–10409, 2001
  42. Arabidopsis Research 2001
    THE PLANT CELL ONLINE, vol. 13, no. 9, pp. 1973–1982, 2001
  43. Requirement of CHROMOMETHYLASE3 for Maintenance of CpXpG Methylation
    Science, vol. 292, no. 5524, pp. 2077–2080, 2001
  44. Conserved plant genes with similarity to mammalian de novo DNA methyltransferases
    Proceedings of the National Academy of Sciences, vol. 97, no. 9, pp. 4979–4984, 2000
  45. Regulation of SUP Expression Identifies Multiple Regulators Involved in Arabidopsis Floral Meristem Development
    THE PLANT CELL ONLINE, vol. 12, no. 9, pp. 1607–1618, 2000
  46. The Late Flowering Phenotype of fwa Mutants Is Caused by Gain-of-Function Epigenetic Alleles of a Homeodomain Gene
    Molecular Cell, vol. 6, no. 4, pp. 791–802, 2000
  47. Ectopic hypermethylation of flower-specific genes in Arabidopsis
    Current Biology, vol. 10, no. 4, pp. 179–186, 2000
  48. Gene silencing: Maintaining methylation patterns
    Current Biology, vol. 9, no. 16, pp. R617–R619, 1999
  49. A decision support system for regional hazardous waste management alternatives
    Journal of Applied Mathematics and Decision Sciences, vol. 2, no. 1, pp. 23–50, 1998
  50. Hypermethylated SUPERMAN Epigenetic Alleles in Arabidopsis
    Science, vol. 277, no. 5329, pp. 1100–1103, 1997
  51. SPINDLY, a tetratricopeptide repeat protein involved in gibberellin signal transduction in Arabidopsis
    Proceedings of the National Academy of Sciences, vol. 93, no. 17, pp. 9292–9296, 1996
  52. Isolation and characterization of abscisic acid-deficient Arabidopsis mutants at two new loci
    The Plant Journal, vol. 10, no. 4, pp. 655–661, 1996
  53. Test problem construction for linear bilevel programming problems
    Journal of Global Optimization, vol. 8, no. 3, pp. 235–243, 1996
  54. Computational experience using an edge search algorithm for linear reverse convex programs
    Journal of Global Optimization, vol. 9, no. 2, pp. 153–167, 1996
  55. Comments on a reverse convex programming algorithm
    Journal of Global Optimization, vol. 5, no. 1, pp. 95–96, 1994
  56. On the use of cuts in reverse convex programs
    Journal of Optimization Theory and Applications, vol. 68, no. 2, pp. 257–274, 1991
  57. A level set algorithm for a class of reverse convex programs
    Annals of Operations Research, vol. 25, no. 1, pp. 19–42, 1990
  58. Convergence of a Tuy-type algorithm for concave minimization subject to linear inequality constraints
    Applied Mathematics & Optimization, vol. 7, no. 1, pp. 1–9, 1981
  59. Reverse convex programming
    Applied Mathematics & Optimization, vol. 6, no. 1, pp. 63–78, 1980
  60. Linear programs with an additional reverse convex constraint
    Applied Mathematics & Optimization, vol. 6, no. 1, pp. 257–269, 1980
  61. A global minimization algorithm for a class of one-dimensional functions*1
    Journal of Mathematical Analysis and Applications, vol. 62, no. 2, pp. 310–324, 1978
  62. A note on Shepherd's duality theorem
    Journal of Economic Theory, vol. 12, no. 3, pp. 494–495, 1976
  63. Characterization of local solutions for a class of nonconvex programs
    Journal of Optimization Theory and Applications, vol. 15, no. 5, pp. 549–564, 1975
  64. An algorithm for optimizing network flow capacity under economies of scale
    Journal of Optimization Theory and Applications, vol. 15, no. 5, pp. 565–586, 1975
  65. On Shephard's duality theorem
    Journal of Economic Theory, vol. 4, no. 3, pp. 458–464, 1972
  66. Production Correspondences
    Econometrica, vol. 38, no. 5, p. 754, 1970