Samuel Butcher

Personal Home Page

http://www.biochem.wisc.edu/faculty/butcher/

Articles in Scholarly Journals [Incomplete List]

  1. Guanidinoneomycin B Recognition of an HIV-1 RNA Helix
    ChemBioChem, vol. 9, no. 1, pp. 93–102, 2008
  2. Global Molecular Structure and Interfaces: Refining an RNA:RNA Complex Structure Using Solution X-ray Scattering Data
    Journal of the American Chemical Society, vol. 130, no. 11, pp. 3292–3293, 2008
  3. Structure and Interactions of the First Three RNA Recognition Motifs of Splicing Factor Prp24
    Journal of Molecular Biology, vol. 367, no. 5, pp. 1447–1458, 2007
  4. Programmed Ribosomal Frameshifting in SIV Is Induced by a Highly Structured RNA Stem–Loop
    Journal of Molecular Biology, vol. 373, no. 3, pp. 652–663, 2007
  5. Measuring the dynamic surface accessibility of RNA with the small paramagnetic molecule TEMPOL
    Nucleic Acids Research, vol. 36, no. 4, pp. e20–e20, 2007
  6. DNA mimicry by a high-affinity anti-NF- B RNA aptamer
    Nucleic Acids Research, vol. 36, no. 4, pp. 1227–1236, 2007
  7. Structure and thermodynamics of a conserved U2 snRNA domain from yeast and human
    RNA, vol. 13, no. 3, pp. 328–338, 2007
  8. A dynamic bulge in the U6 RNA internal stem loop functions in spliceosome assembly and activation
    RNA, vol. 13, no. 12, pp. 2252–2265, 2007
  9. Role of metal ions in the tetraloop-receptor complex as analyzed by NMR
    RNA, vol. 13, no. 1, pp. 76–86, 2006
  10. Corrigendum to “RNA Helical Packing in Solution: NMR Structure of a 30 kDa GAAA Tetraloop–Receptor Complex” [J. Mol. Biol. 351 (2005) 371–382]
    Journal of Molecular Biology, vol. 360, no. 3, pp. 742–742, 2006
  11. Resonance assignments for the two N-terminal RNA recognition motifs (RRM) of the S. cerevisiae Pre-mRNA Processing Protein Prp24
    Journal of Biomolecular NMR, vol. 36, no. S1, pp. 58–58, 2006
  12. Flipping Off the Riboswitch: RNA Structures That Control Gene Expression
    ACS Chemical Biology, vol. 1, no. 6, pp. 341–345, 2006
  13. Corrigendum: U2–U6 RNA folding reveals a group II intron-like domain and a four-helix junction
    Nature Structural & Molecular Biology, vol. 12, no. 1, Article ID nsmb0105-99, 1 pages, 2005
  14. Towards understanding the catalytic core structure of the spliceosome
    Biochemical Society Transactions, vol. 33, no. 3, p. 447, 2005
  15. Solution Structure and Thermodynamic Investigation of the HIV-1 Frameshift Inducing Element
    Journal of Molecular Biology, vol. 349, no. 5, pp. 1011–1023, 2005
  16. RNA Helical Packing in Solution: NMR Structure of a 30kDa GAAA Tetraloop–Receptor Complex
    Journal of Molecular Biology, vol. 351, no. 2, pp. 371–382, 2005
  17. Dynamics and Metal Ion Binding in the U6 RNA Intramolecular Stem–Loop as Analyzed by NMR
    Journal of Molecular Biology, vol. 353, no. 3, pp. 540–555, 2005
  18. Pseudoknots: RNA Structures with Diverse Functions
    PLoS Biology, vol. 3, no. 6, p. e213, 2005
  19. Solution structure of domain 5 of a group II intron ribozyme reveals a new RNA motif
    Nature Structural & Molecular Biology, vol. 11, no. 2, Article ID nsmb717, 5 pages, 2004
  20. U2–U6 RNA folding reveals a group II intron-like domain and a four-helix junction
    Nature Structural & Molecular Biology, vol. 11, no. 12, Article ID nsmb863, 5 pages, 2004
  21. STAR-studded circuitry
    Nature Structural & Molecular Biology, vol. 11, no. 1, Article ID nsmb0104-2, 1 pages, 2004
  22. Journal of the American Chemical Society, vol. 126, no. 25, pp. 7746–7747, 2004
  23. Biochemistry, vol. 43, no. 43, pp. 13739–13747, 2004
  24. Biochemistry, vol. 42, no. 6, pp. 1470–1477, 2003
  25. Solution structure of the HIV-1 frameshift inducing stem-loop RNA
    Nucleic Acids Research, vol. 31, no. 15, pp. 4326–4331, 2003
  26. Structure of the U6 RNA intramolecular stem-loop harboring an SP-phosphorothioate modification
    RNA, vol. 9, no. 5, pp. 533–542, 2003
  27. Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure
    Nature Structural Biology, vol. 9, no. 6, pp. 431–435, 2002
  28. Structure and function of the small ribozymes
    Current Opinion in Structural Biology, vol. 11, no. 3, pp. 315–320, 2001
  29. A novel family of RNA tetraloop structure forms the recognition site for Saccharomyces cerevisiae RNase III
    The EMBO Journal, vol. 20, no. 24, pp. 7240–7249, 2001
  30. Biochemistry, vol. 40, no. 23, pp. 6929–6936, 2001
  31. Biochemistry, vol. 39, no. 9, pp. 2174–2182, 2000
  32. Biochemistry, vol. 39, no. 51, pp. 16026–16032, 2000
  33. Nature Structural Biology, vol. 6, no. 3, pp. 212–216, 1999
  34. Optimization of Triple-Resonance HCN Experiments for Application to Larger RNA Oligonucleotides
    Journal of Magnetic Resonance, vol. 130, no. 1, pp. 119–124, 1998
  35. Solution structure of the conserved 16 S-like ribosomal RNA UGAA tetraloop
    Journal of Molecular Biology, vol. 268, no. 2, pp. 348–358, 1997
  36. Mutant ATP-binding RNA aptamers reveal the structural basis for ligand binding
    Journal of Molecular Biology, vol. 273, no. 2, pp. 467–478, 1997
  37. Solution structure of a GAAA tetraloop receptor RNA
    The EMBO Journal, vol. 16, no. 24, pp. 7490–7499, 1997
  38. Through-bond correlation of imino and aromatic resonances in 13C-,15N-labeled RNA via heteronuclear TOCSY
    Journal of Biomolecular NMR, vol. 7, no. 1, pp. 83–87, 1996
  39. Reconstitution of Hairpin Ribozyme Activity following Separation of Functional Domains
    Journal of Biological Chemistry, vol. 270, no. 50, pp. 29648–29651, 1995
  40. Biochemistry, vol. 33, no. 4, pp. 992–999, 1994
  41. Structure-mapping of the Hairpin Ribozyme Magnesium-dependent Folding and Evidence for Tertiary Interactions within the Ribozyme-Substrate Complex
    Journal of Molecular Biology, vol. 244, no. 1, pp. 52–63, 1994
  42. Substrate selection rules for the hairpin ribozyme determined by in vitro selection, mutation, and analysis of mismatched substrates.
    Genes & Development, vol. 7, no. 1, pp. 130–138, 1993