Masha Niv

Masha Niv received the Ph.D. degree in theoretical physical chemistry, Hebrew University, Jerusalem, Israel, in 2001. He was a Bioinformatics and Molecular Modeling Team Leader, Keryx Biopharmaceuticals, Israel, 2001–2003, and a Postdoctorate Associate, Weill Medical College of Cornell University, NY, USA, 2003–2005. Niv was an Instructor at Weill Medical College of Cornell University, NY, USA, 2005–2007, and a Lecturer (PI) at Hebrew University of Jerusalem, Rehovot, Israel, since 2007.

Biography Updated on 5 February 2008

Personal Home Page

http://departments.agri.huji.ac.il/biochem/MashaNiv.html

Articles in Scholarly Journals [Incomplete List]

  1. Identification of GATC- and CCGG-recognizing Type II REases and their putative specificity-determining positions using Scan2S—A novel motif scan algorithm with optional secondary structure constraints
    Proteins: Structure, Function, and Bioinformatics, 2007
  2. Influence of oligomerization on the dynamics of G-protein coupled receptors as assessed by normal mode analysis
    Proteins: Structure, Function, and Bioinformatics, 2007
  3. Modeling activated states of GPCRs: the rhodopsin template
    Journal of Computer-Aided Molecular Design, vol. 21, no. 7, pp. 419–419, 2007
  4. Dynamics of Electronic States and Spin-Flip for Photodissociation of Dihalogens in Matrices: Experiment and Semiclassical Surface-Hopping and Quantum Model Simulations for F2 and ClF in Solid Ar
    Journal of Physical Chemistry A, vol. 111, no. 38, pp. 9573–9585, 2007
  5. Topology of Type II REases revisited; structural classes and the common conserved core
    Nucleic Acids Research, vol. 35, no. 7, pp. 2227–2237, 2007
  6. Modeling activated states of GPCRs: the rhodopsin template
    Journal of Computer-Aided Molecular Design, vol. 20, no. 7-8, pp. 437–448, 2006
  7. Journal of the American Chemical Society, vol. 127, no. 40, pp. 14072–14079, 2005
  8. Molecular Determinants for the Complex Binding Specificity of the PDZ Domain in PICK1
    Journal of Biological Chemistry, vol. 280, no. 21, pp. 20539–20548, 2005
  9. PDZBase: a protein-protein interaction database for PDZ-domains
    Bioinformatics, vol. 21, no. 6, pp. 827–828, 2004
  10. Sequence-based Design of Kinase Inhibitors Applicable for Therapeutics and Target Identification
    Journal of Biological Chemistry, vol. 279, no. 2, pp. 1242–1255, 2003
  11. Ultrafast Solvent-Induced Spin-Flip and Nonadiabatic Coupling: ClF in Argon Solids
    Physical Review Letters, vol. 89, no. 10, 2002
  12. Formation of novel rare-gas-containing molecules by molecular photodissociation in clusters
    Faraday Discussions, vol. 118, pp. 269–280, 2001
  13. The Journal of Physical Chemistry A, vol. 105, no. 12, pp. 2770–2782, 2001
  14. A reflection principle for the control of molecular photodissociation in solids: model simulation for F2 in Ar
    Chemical Physics Letters, vol. 327, no. 1-2, pp. 76–84, 2000
  15. Photodissociation and recombination of F[sub 2] molecule in Ar[sub 54] cluster: Nonadiabatic molecular dynamics simulations
    The Journal of Chemical Physics, vol. 113, no. 16, p. 6660, 2000
  16. Photodissociation of HBr adsorbed on the surface and embedded in large Ar[sub n] clusters
    The Journal of Chemical Physics, vol. 113, no. 1, p. 329, 2000
  17. Photodissociation of HCl adsorbed on the surface of an Ar[sub 12] cluster: Nonadiabatic molecular dynamics simulations
    The Journal of Chemical Physics, vol. 110, no. 22, p. 11047, 1999
  18. Photodissociation, electronic relaxation and recombination of HCl in Arn(HCl) clusters Non-adiabatic molecular dynamics simulations
    Faraday Discussions, vol. 108, pp. 243–254, 1997