John Parkinson

Personal Home Page

http://www.compsysbio.org/lab

Articles in Scholarly Journals [Incomplete List]

  1. High-pressure processing and water-holding capacity of fresh and cold-smoked salmon (Salmo salar)
    LWT - Food Science and Technology, vol. 40, no. 3, pp. 544–551, 2007
  2. Comparative genomics of elastin: Sequence analysis of a highly repetitive protein
    Matrix Biology, vol. 26, no. 7, pp. 524–540, 2007
  3. Ubiquitination screen using protein microarrays for comprehensive identification of Rsp5 substrates in yeast
    Molecular Systems Biology, vol. 3, Article ID msb4100159, 2007
  4. Structural characterisation of the photoisomers of reactive sulfonated azo dyes by NMR spectroscopy and DFT calculations
    Photochemical & Photobiological Sciences, vol. 6, no. 9, p. 1010, 2007
  5. Draft Genome of the Filarial Nematode Parasite Brugia malayi
    Science, vol. 317, no. 5845, pp. 1756–1760, 2007
  6. Cell++--simulating biochemical pathways
    Bioinformatics, vol. 22, no. 23, pp. 2918–2925, 2006
  7. Genome Biology, vol. 7, no. 8, p. R75, 2006
  8. Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
    Nature, vol. 440, no. 7084, Article ID nature04670, 6 pages, 2006
  9. Sequences and domain structures of mammalian, avian, amphibian and teleost tropoelastins: Clues to the evolutionary history of elastins
    Matrix Biology, vol. 25, no. 8, pp. 492–504, 2006
  10. Diversity in Guanine-Selective DNA Binding Modes for an Organometallic Ruthenium Arene Complex
    Angewandte Chemie International Edition, vol. 45, no. 48, pp. 8153–8156, 2006
  11. Ruthenation of Duplex and Single-Stranded d(CGGCCG) by Organometallic Anticancer Complexes
    Chemistry - A European Journal, vol. 12, no. 23, pp. 6151–6165, 2006
  12. Competitive reactions of a ruthenium arene anticancer complex with histidine, cytochrome c and an oligonucleotide
    JBIC Journal of Biological Inorganic Chemistry, vol. 10, no. 2, pp. 147–155, 2005
  13. Interaction network containing conserved and essential protein complexes in Escherichia coli
    Nature, vol. 433, no. 7025, Article ID nature03239, 6 pages, 2005
  14. Journal of Chemical Information and Modeling , vol. 45, no. 6, pp. 1896–1907, 2005
  15. Potential Roles for Diatomists in Nanotechnology
    Journal of Nanoscience and Nanotechnology, vol. 5, no. 1, pp. 35–40, 2005
  16. A Biochemical Prognostic Model of Outcome in Paracetamol-Induced Acute Liver Injury
    Transplantation, vol. 80, no. 12, pp. 1712–1717, 2005
  17. Acquisition of instrumental conditioned reinforcement is resistant to the devaluation of the unconditioned stimulus
    The Quarterly Journal of Experimental Psychology: Section B, vol. 58, no. 1, pp. 19–30, 2005
  18. Neural contributions to the motivational control of appetite in humans
    European Journal of Neuroscience, vol. 20, no. 5, pp. 1411–1418, 2004
  19. PartiGeneDB--collating partial genomes
    Nucleic Acids Research, vol. 33, no. Database issue, pp. D303–D307, 2004
  20. PartiGene--constructing partial genomes
    Bioinformatics, vol. 20, no. 9, pp. 1398–1404, 2004
  21. Biochemical prognostic markers of outcome in non-paracetamol???induced fulminant hepatic failure
    Transplantation, vol. 77, no. 2, pp. 200–205, 2004
  22. Inorganic Chemistry, vol. 43, no. 12, pp. 3561–3572, 2004
  23. A transcriptomic analysis of the phylum Nematoda
    Nature Genetics, vol. 36, no. 12, Article ID ng1472, 8 pages, 2004
  24. Journal of the American Chemical Society, vol. 126, no. 36, pp. 11338–11349, 2004
  25. Journal of the American Chemical Society, vol. 126, no. 37, pp. 11612–11620, 2004
  26. DNA binding of a short lexitropsin
    Bioorganic & Medicinal Chemistry Letters, vol. 14, no. 5, pp. 1353–1356, 2004
  27. Comparison of experimental and calculated 1H NMR chemical shifts of geometric photoisomers of azo dyes
    Chemical Physics Letters, vol. 374, no. 3-4, pp. 372–380, 2003
  28. Nucleotide Cross-Linking Induced by Photoreactions of Platinum(IV)–Azide Complexes
    Angewandte Chemie International Edition, vol. 42, no. 3, pp. 335–339, 2003
  29. Novel Adducts of the Anticancer Drug Oxaliplatin with Glutathione and Redox Reactions with Glutathione Disulfide
    European Journal of Inorganic Chemistry, vol. 2003, no. 6, pp. 1206–1214, 2003
  30. Caenorhabditis elegans?applications to nematode genomics
    Comparative and Functional Genomics, vol. 4, no. 2, pp. 194–202, 2003
  31. Selective Recognition of Configurational Substates of Zinc Cyclam by Carboxylates: Implications for the Design and Mechanism of Action of Anti-HIV Agents
    Chemistry - A European Journal, vol. 9, no. 19, pp. 4709–4717, 2003
  32. Sequence-Selective Metalation of Double-Helical Oligodeoxyribonucleotides with PtII, MnII, and ZnII Ions
    Chemistry - A European Journal, vol. 9, no. 7, pp. 1620–1630, 2003
  33. Journal of the American Chemical Society, vol. 125, no. 1, pp. 173–186, 2003
  34. Role of the anterior cingulate cortex in the control over behavior by Pavlovian conditioned stimuli in rats.
    Behavioral Neuroscience, vol. 117, no. 3, Article ID 2003-05069-017, 21 pages, 2003
  35. 400?000 nematode ESTs on the Net
    Trends in Parasitology, vol. 19, no. 7, pp. 283–286, 2003
  36. Expressed sequence tag survey of gene expression in the scab mite Psoroptes ovis allergens, proteases and free-radical scavengers
    Parasitology, vol. 126, no. 5, pp. 451–460, 2003
  37. The effect of hypothermia on primary porcine hepatocyte metabolism monitored by (1H) nuclear magnetic resonance spectroscopy
    European Journal of Gastroenterology & Hepatology, vol. 15, no. 3, pp. 283–293, 2003
  38. SimiTri--visualizing similarity relationships for groups of sequences
    Bioinformatics, vol. 19, no. 3, pp. 390–395, 2003
  39. Synergistic Anion and Metal Binding to the Ferric Ion-binding Protein from Neisseria gonorrhoeae
    Journal of Biological Chemistry, vol. 278, no. 4, pp. 2490–2502, 2003
  40. Induced-fit recognition of DNA by organometallic complexes with dynamic stereogenic centers
    Proceedings of the National Academy of Sciences, vol. 100, no. 25, pp. 14623–14628, 2003
  41. Magnesium aryloxides: synthesis, structure, solution behavior and magnesiate ion formation
    Dalton Transactions, no. 7, pp. 1365–1372, 2003
  42. Synthesis of the mixed lithium–potassium–(bis)magnesium N-metallated/N, C-dimetallated amide [Li2K2Mg4{But(Me3Si)N}4{But[Me2(H2C)Si]N}4]: an inverse crown molecule with an atomless cavityElectronic supplementary information (ESI) available: NMR spectra. See http://www.rsc.org/suppdata/cc/b3/b301374j/
    Chemical Communications, no. 10, pp. 1140–1141, 2003
  43. Multiple bacteria encode metallothioneins and SmtA-like zinc fingers
    Molecular Microbiology, vol. 45, no. 5, pp. 1421–1432, 2002
  44. Design of ETB receptor agonists: NMR spectroscopic and conformational studies of ET7-21[Leu7, Aib11, Cys(Acm)15]
    Protein Engineering Design and Selection, vol. 15, no. 3, pp. 161–167, 2002
  45. BMC Bioinformatics, vol. 3, no. 1, p. 31, 2002
  46. BMC Immunology, vol. 3, no. 1, p. 7, 2002
  47. Inorganic Chemistry, vol. 41, no. 17, pp. 4539–4547, 2002
  48. Inorganic Chemistry, vol. 41, no. 17, pp. 4509–4523, 2002
  49. Nucleus accumbens dopamine depletion impairs both acquisition and performance of appetitive Pavlovian approach behaviour: implications for mesoaccumbens dopamine function
    Behavioural Brain Research, vol. 137, no. 1-2, pp. 149–163, 2002
  50. Emotion and motivation: the role of the amygdala, ventral striatum, and prefrontal cortex
    Neuroscience & Biobehavioral Reviews, vol. 26, no. 3, pp. 321–352, 2002
  51. Journal of the American Chemical Society, vol. 124, no. 12, pp. 3064–3082, 2002
  52. Journal of the American Chemical Society, vol. 124, no. 31, pp. 9105–9112, 2002
  53. 1H NMR spectroscopy as a tool to evaluate key metabolic functions of primary porcine hepatocytes after cryopreservation
    NMR in Biomedicine, vol. 15, no. 3, pp. 241–250, 2002
  54. cis-[PtCl2(NH3){2-(2-hydroxyethyl)pyridine}] - an Analogue of the Anticancer Drug AMD473: Unusual Hydrolysis Rates and pKa Values for the Diaqua Adduct
    European Journal of Inorganic Chemistry, vol. 2002, no. 5, pp. 1035–1039, 2002
  55. Unusual features for zirconium(IV) binding to human serum transferrin
    Journal of Biological Inorganic Chemistry, vol. 7, no. 6, pp. 589–599, 2002
  56. The Brugia malayi genome project: expressed sequence tags and gene discovery
    Transactions of the Royal Society of Tropical Medicine and Hygiene, vol. 96, no. 1, pp. 7–17, 2002
  57. [1H, 15N] NMR Studies of the Platination of Phosphorothioate Nucleotides - Monofunctional Sulfur Adducts versus Macrochelation
    European Journal of Inorganic Chemistry, vol. 2001, no. 11, p. 2743, 2001
  58. The effects of excitotoxic lesions of the nucleus accumbens core or shell regions on intravenous heroin self-administration in rats
    Psychopharmacology, vol. 153, no. 4, pp. 455–463, 2001
  59. The effects of nucleus accumbens core and shell lesions on intravenous heroin self-administration and the acquisition of drug-seeking behaviour under a second-order schedule of heroin reinforcement
    Psychopharmacology, vol. 153, no. 4, pp. 464–472, 2001
  60. 200?000 nematode expressed sequence tags on the Net
    Trends in Parasitology, vol. 17, no. 8, pp. 394–396, 2001
  61. The simulated microgravity environment maintains key metabolic functions and promotes aggregation of primary porcine hepatocytes
    Biochimica et Biophysica Acta (BBA) - General Subjects, vol. 1526, no. 2, pp. 119–130, 2001
  62. Structure and dynamics of a platinum(II) aminophosphine complex and its nucleobase adducts
    Journal of the Chemical Society, Dalton Transactions, no. 4, pp. 362–372, 2001
  63. Involvement of the central nucleus of the amygdala and nucleus accumbens core in mediating Pavlovian influences on instrumental behaviour
    European Journal of Neuroscience, vol. 13, no. 10, pp. 1984–1992, 2001
  64. A metallothionein containing a zinc finger within a four-metal cluster protects a bacterium from zinc toxicity
    Proceedings of the National Academy of Sciences, vol. 98, no. 17, pp. 9593–9598, 2001
  65. A Family of Secreted Mucins from the Parasitic Nematode Toxocara canis Bears Diverse Mucin Domains but Shares Similar Flanking Six-cysteine Repeat Motifs
    Journal of Biological Chemistry, vol. 275, no. 50, pp. 39600–39607, 2000
  66. Dissociable roles of the central and basolateral amygdala in appetitive emotional learning
    European Journal of Neuroscience, vol. 12, no. 1, pp. 405–413, 2000
  67. Conserved Surface-Exposed K/R-X-K/R Motifs and Net Positive Charge on Poxvirus Complement Control Proteins Serve as Putative Heparin Binding Sites and Contribute to Inhibition of Molecular Interactions with Human Endothelial Cells: a Novel Mechanism for Evasion of Host Defense
    Journal of Virology, vol. 74, no. 12, pp. 5659–5666, 2000
  68. Finding motivation at Seabrook Island: the ventral striatum, learning and plasticity
    Trends in Neurosciences, vol. 23, no. 9, pp. 383–384, 2000
  69. Inorganic Chemistry, vol. 39, no. 2, pp. 206–215, 2000
  70. Cocaine-seeking by rats: regulation, reinforcement and activation
    Psychopharmacology, vol. 152, no. 2, pp. 123–131, 2000
  71. Application of the NOE experiment to the analysis of boron hydride derivatives: confirming the assignments of the pseudocloso-complex [1,2-Ph2-3-?Cp*?-3,1,2-IrC2B9H9] (Cp*=?5-C5Me5) and the closo-compounds 1-Ph-1,2-C2B10H11 and 1-Ph-2-Me-1,2-C2B10H10
    Inorganica Chimica Acta, vol. 289, no. 1-2, pp. 125–133, 1999
  72. Kinetics of formation and stability of {Pt(dien)} 2+ complexes with octamer and 14-mer DNA oligonucleotides containing a GG sequence
    Journal of Biological Inorganic Chemistry, vol. 4, no. 1, pp. 32–38, 1999
  73. Nucleotide Platination Induced by Visible Light
    Angewandte Chemie International Edition, vol. 38, no. 10, pp. 1460–1463, 1999
  74. A New Platinum Anticancer Drug Forms a Highly Stereoselective Adduct with Duplex DNA
    Angewandte Chemie International Edition, vol. 38, no. 13-14, pp. 2060–2063, 1999
  75. A Novel Dinuclear Diaminoplatinum(II) Glutathione Macrochelate
    Angewandte Chemie International Edition, vol. 38, no. 19, pp. 2949–2951, 1999
  76. Centric diatom morphogenesis: a model based on a DLA algorithm investigating the potential role of microtubules
    Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, vol. 1452, no. 1, pp. 89–102, 1999
  77. Beyond micromachining: the potential of diatoms
    Trends in Biotechnology, vol. 17, no. 5, pp. 190–196, 1999
  78. A linear endothelin-1 analogue: solution structure of ET-1[Aib1,3,11,15, Nle7] by nuclear magnetic resonance spectroscopy and molecular modelling
    Neurochemistry International, vol. 35, no. 1, pp. 35–45, 1999
  79. Journal of the American Chemical Society, vol. 121, no. 36, pp. 8193–8203, 1999
  80. Solution structure of a novel ETB receptor selective agonist ET1-21[Cys(Acm)1,15, Aib3,11, Leu7] by nuclear magnetic resonance spectroscopy and molecular modelling
    Journal of Peptide Research, vol. 53, no. 3, pp. 223–233, 1999
  81. Gold(III)-induced oxidation of glycine†
    Chemical Communications, no. 15, pp. 1359–1360, 1999
  82. Associative Processes in Addiction and Reward The Role of Amygdala-Ventral Striatal Subsystems
    Annals of the New York Academy of Sciences, vol. 877, no. 1 ADVANCING FRO, pp. 412–438, 1999
  83. Central modules of the vaccinia virus complement control protein are not in extensive contact
    Biochemical Journal, vol. 344, no. 1, p. 167, 1999
  84. Cisplatin Binding Sites on Human Albumin
    Journal of Biological Chemistry, vol. 273, no. 24, pp. 14721–14730, 1998
  85. Coordination of Zn2+ (and Cd2+) by Prokaryotic Metallothionein. INVOLVEMENT OF HIS-IMIDAZOLE
    Journal of Biological Chemistry, vol. 273, no. 36, pp. 22957–22961, 1998
  86. DNA duplexes stabilized by modified monomer residues: synthesis and stability
    Journal of the Chemical Society, Perkin Transactions 1, no. 6, pp. 1131–1138, 1998
  87. New approach to the solution chemistry of bismuth citrate antiulcer complexes
    Chemical Communications, no. 8, pp. 881–882, 1998
  88. Journal of the American Chemical Society, vol. 120, no. 32, pp. 8253–8254, 1998
  89. High resolution ? NMR spectroscopic studies on dynamic biochemical processes in incubated human seminal fluid samples
    Biochimica et Biophysica Acta (BBA) - General Subjects, vol. 1379, no. 3, pp. 367–380, 1998
  90. Solution conformation of an ETB selective agonist, ET-1[Cys(Acm)1,15,Ala3,Leu7,Aib11], in CD3OH/H2O by 1H NMR and molecular modelling
    FEBS Letters, vol. 425, no. 2, pp. 234–238, 1998
  91. Solution structure determination of endothelin-1 in methanol/water by NMR and molecular modelling methods
    Journal of Peptide Science, vol. 3, no. 6, pp. 415–428, 1997
  92. Analytical Chemistry, vol. 69, no. 8, pp. 1504–1509, 1997
  93. A novel symmetric silicate anion
    Journal of the Chemical Society, Dalton Transactions, no. 15, pp. 2533–2534, 1997
  94. Assignments of the1H and13C NMR Spectra of Anhydroerythromycin A in Organic and Aqueous Solutions
    Magnetic Resonance in Chemistry, vol. 34, no. 7, pp. 559–560, 1996
  95. 13C-NMR determination of the solubility and molecular dynamics of cholesteryl oleate in dimyristoylphosphatidylcholine vesicles
    Chemistry and Physics of Lipids, vol. 84, no. 2, pp. 93–104, 1996
  96. Unprecedented ring expansion of [60]fullerene: incorporation of nitrogen at an open 6,6-ring juncture by regiospecific reduction of oxycarbonylaziridino-[2?,3?:1,2][60]fullerenes. Synthesis of 1a-aza-1(6a)-homo[60]fullerene, C60H2NH
    Chemical Communications, no. 4, p. 507, 1996
  97. Exchange reactions in aluminosilicate solutions
    Chemical Communications, no. 5, p. 593, 1996
  98. Complete assignment of the 1H and 13C NMR spectra and solution conformation of the antitumour antibiotic, Aclacinomycin A
    Tetrahedron, vol. 51, no. 26, pp. 7215–7222, 1995
  99. Biochemistry, vol. 33, no. 28, pp. 8442–8452, 1994
  100. Analysis of biological fluids using 600 MHz proton NMR spectroscopy: Application of homonuclear two-dimensional J-resolved spectroscopy to urine and blood plasma for spectral simplification and assignment
    Journal of Pharmaceutical and Biomedical Analysis, vol. 11, no. 1, pp. 21–31, 1993
  101. 13C-NMR determination of the molecular dynamics of cholesterol in dimyristoylphosphatidylcholine vesicles
    Chemistry and Physics of Lipids, vol. 66, no. 1-2, pp. 1–11, 1993
  102. The conformation of cyclo-[(R)-cysteinyl-(R)-cysteine] in solution
    Tetrahedron, vol. 49, no. 26, pp. 5891–5904, 1993
  103. Biochemistry, vol. 29, no. 44, pp. 10181–10190, 1990