Paul Harrison

Personal Home Page

http://biology.mcgill.ca/faculty/harrison/index.htm

Articles in Scholarly Journals [Incomplete List]

  1. Evolution of Budding Yeast Prion-determinant Sequences Across Diverse Fungi
    Journal of Molecular Biology, vol. 368, no. 1, pp. 273–282, 2007
  2. Analysis of the role of retrotransposition in gene evolution in vertebrates
    BMC Bioinformatics, vol. 8, no. 1, p. 308, 2007
  3. BMC Bioinformatics, vol. 7, no. 1, p. 441, 2006
  4. PseudoPipe: an automated pseudogene identification pipeline
    Bioinformatics, vol. 22, no. 12, pp. 1437–1439, 2006
  5. Integrated Pseudogene Annotation for Human Chromosome 22: Evidence for Transcription
    Journal of Molecular Biology, vol. 349, no. 1, pp. 27–45, 2005
  6. The evolutionary fate of MULE-mediated duplications of host gene fragments in rice
    Genome Research, vol. 15, no. 9, pp. 1292–1297, 2005
  7. Transcribed processed pseudogenes in the human genome: an intermediate form of expressed retrosequence lacking protein-coding ability
    Nucleic Acids Research, vol. 33, no. 8, pp. 2374–2383, 2005
  8. The transcriptional activity of human Chromosome 22
    Genes & Development, vol. 17, no. 4, pp. 529–540, 2003
  9. Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
    Genome Research, vol. 13, no. 12, pp. 2541–2558, 2003
  10. Identification of pseudogenes in the Drosophila melanogaster genome
    Nucleic Acids Research, vol. 31, no. 3, pp. 1033–1037, 2003
  11. A 'PolyORFomic' Analysis of Prokaryote Genomes Using Disabled-homology Filtering Reveals Conserved But Undiscovered Short ORFs
    Journal of Molecular Biology, vol. 333, no. 5, pp. 885–892, 2003
  12. A small reservoir of disabled ORFs in the yeast genome and its implications for the dynamics of proteome evolution1
    Journal of Molecular Biology, vol. 316, no. 3, pp. 409–419, 2002
  13. An integrated approach for finding overlooked genes in yeast
    Nature Biotechnology, vol. 20, no. 1, pp. 58–63, 2002
  14. Comprehensive analysis of amino acid and nucleotide composition in eukaryotic genomes, comparing genes and pseudogenes
    Nucleic Acids Research, vol. 30, no. 11, pp. 2515–2523, 2002
  15. A question of size: the eukaryotic proteome and the problems in defining it
    Nucleic Acids Research, vol. 30, no. 5, pp. 1083–1090, 2002
  16. Studying Genomes Through the Aeons: Protein Families, Pseudogenes and Proteome Evolution
    Journal of Molecular Biology, vol. 318, no. 5, pp. 1155–1174, 2002
  17. Digging Deep for Ancient Relics: A Survey of Protein Motifs in the Intergenic Sequences of Four Eukaryotic Genomes
    Journal of Molecular Biology, vol. 323, no. 5, pp. 811–822, 2002
  18. Molecular Fossils in the Human Genome: Identification and Analysis of the Pseudogenes in Chromosomes 21 and 22
    Genome Research, vol. 12, no. 2, pp. 272–280, 2002
  19. Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome
    Genome Research, vol. 12, no. 10, pp. 1466–1482, 2002
  20. SNPs on human chromosomes 21 and 22 - analysis in terms of protein features and pseudogenes
    Pharmacogenomics, vol. 3, no. 3, pp. 393–402, 2002
  21. Conformational propagation with prion-like characteristics in a simple model of protein folding
    Protein Science, vol. 10, no. 4, pp. 819–835, 2001
  22. Digging for dead genes: an analysis of the characteristics of the pseudogene population in the Caenorhabditis elegans genome
    Nucleic Acids Research, vol. 29, no. 3, pp. 818–830, 2001
  23. Thermodynamics of model prions and its implications for the problem of prion protein folding
    Journal of Molecular Biology, vol. 286, no. 2, pp. 593–606, 1999
  24. Ataxia in prion protein (PrP)-deficient mice is associated with upregulation of the novel PrP-like protein doppel
    Journal of Molecular Biology, vol. 292, no. 4, pp. 797–817, 1999
  25. The prion folding problem
    Current Opinion in Structural Biology, vol. 7, no. 1, pp. 53–59, 1997
  26. Biochemistry, vol. 36, no. 13, pp. 3837–3845, 1997
  27. The Disulphide ß-Cross: From Cystine Geometry and Clustering to Classification of Small Disulphide-rich Protein Folds
    Journal of Molecular Biology, vol. 264, no. 3, pp. 603–623, 1996
  28. Analysis and Classification of Disulphide Connectivity in Proteins The Entropic Effect of Cross-linkage
    Journal of Molecular Biology, vol. 244, no. 4, pp. 448–463, 1994