Kuo-Chen Chou

Kuo-Chen Chou is the founder of Gordon Life Science Institute. He is also an Advisory Professor of several Universities. Dr. Chou has published more than 320 papers in international scientific journals. His main interest are (1) development of various novel methods in bioinformatics and proteomics, such as predicting HIV protease cleavage sites, protein subcellular location, membrane protein type, signal peptide, protein quaternary attribute, enzyme main-functional classes and subfunctional classes, enzyme active sites, protein tight turns, and protein structural classes; (2) investigation of internal collective motion of biomacromolecules and its biological functions; (3) prediction and modeling of drug-discovery-related proteins, such as GABA receptors, SARS coronavirus proteinase, apoptosis proteins, membrane ion-channels, G-protein-coupled receptors, adhesion proteins, growth hormones, tau protein kinases, GFAT (for diabetes), b-secretases (for Alzheimer disease), antifreeze proteins, dopmin receptors, as well as those targeted for finding drugs against various infectious diseases and CNS diseases; (4) introduction of new physical conceptions to elucidate various marvelous dynamic mechanisms in biomacromolecules, such as allosteric transition, cooperativity effects, and intercalation between DNA and drugs; (5) development of graphical rules for studying enzyme kinetics and protein folding dynamics; (6) investigation of protein structural characters and revelation of their origin; (7) introduction of diagrammatic approach for codon usage analysis. To see Dr. Chou’s publication list, open http://gordonlifescience.org/members/kcchou/publication.html; http://www.pami.sjtu.edu.cn/people/kcchou/publications.htm; or http://home.san.rr.com/kchou/publication.htm.

Biography Updated on 6 February 2008

Personal Home Page

http://www.pami.sjtu.edu.cn/people/kcchou/index.htm

Articles in Scholarly Journals [Incomplete List]

  1. Virus-PLoc: A fusion classifier for predicting the subcellular localization of viral proteins within host and virus-infected cells
    Biopolymers, vol. 85, no. 3, pp. 233–240, 2007
  2. Large-scale plant protein subcellular location prediction
    Journal of Cellular Biochemistry, vol. 100, no. 3, pp. 665–678, 2007
  3. Peptide reagent design based on physical and chemical properties of amino acid residues
    Journal of Computational Chemistry, vol. 28, no. 12, pp. 2043–2050, 2007
  4. Recent progress in protein subcellular location prediction
    Analytical Biochemistry, vol. 370, no. 1, pp. 1–16, 2007
  5. PseAAC: A flexible web server for generating various kinds of protein pseudo amino acid composition
    Analytical Biochemistry, 2007
  6. MemType-2L: A Web server for predicting membrane proteins and their types by incorporating evolution information through Pse-PSSM
    Biochemical and Biophysical Research Communications, vol. 360, no. 2, pp. 339–345, 2007
  7. 3D structure modeling of cytochrome P450 2C19 and its implication for personalized drug design
    Biochemical and Biophysical Research Communications, vol. 355, no. 2, pp. 513–519, 2007
  8. Hum-mPLoc: An ensemble classifier for large-scale human protein subcellular location prediction by incorporating samples with multiple sites
    Biochemical and Biophysical Research Communications, vol. 355, no. 4, pp. 1006–1011, 2007
  9. Signal-CF: A subsite-coupled and window-fusing approach for predicting signal peptides
    Biochemical and Biophysical Research Communications, vol. 357, no. 3, pp. 633–640, 2007
  10. Insights from modeling the 3D structure of NAD(P)H-dependent d-xylose reductase of Pichia stipitis and its binding interactions with NAD and NADP
    Biochemical and Biophysical Research Communications, vol. 359, no. 2, pp. 323–329, 2007
  11. EzyPred: A top-down approach for predicting enzyme functional classes and subclasses
    Biochemical and Biophysical Research Communications, vol. 364, no. 1, pp. 53–59, 2007
  12. Analogue inhibitors by modifying oseltamivir based on the crystal neuraminidase structure for treating drug-resistant H5N1 virus
    Biochemical and Biophysical Research Communications, vol. 362, no. 2, pp. 525–531, 2007
  13. Signal-3L: A 3-layer approach for predicting signal peptides
    Biochemical and Biophysical Research Communications, vol. 363, no. 2, pp. 297–303, 2007
  14. Computational studies of the binding mechanism of calmodulin with chrysin
    Biochemical and Biophysical Research Communications, vol. 358, no. 4, pp. 1102–1107, 2007
  15. Corrigendum to “3D structure modeling of cytochrome P450 2C19 and its implication for personalized drug design” [Biochem. Biophys. Res. Commun. 355 (2007) 513–519]
    Biochemical and Biophysical Research Communications, vol. 357, no. 1, pp. 330–330, 2007
  16. Molecular insights of SAH enzyme catalysis and implication for inhibitor design
    Journal of Theoretical Biology, vol. 244, no. 4, pp. 692–702, 2007
  17. Euk-mPLoc: A Fusion Classifier for Large-Scale Eukaryotic Protein Subcellular Location Prediction by Incorporating Multiple Sites
    Journal of Proteome Research, vol. 0, no. 0, pp. 0–0, 2007
  18. Using a New Alignment Kernel Function to Identify Secretory Proteins
    Protein and Peptide Letters, vol. 14, no. 2, pp. 203–208, 2007
  19. Prediction of Protein Structure Classes with Pseudo Amino Acid Composition and Fuzzy Support Vector Machine Network
    Protein and Peptide Letters, vol. 14, no. 8, pp. 811–815, 2007
  20. Predicting the affinity of epitope-peptides with class I MHC molecule HLA-A*0201: an application of amino acid-based peptide prediction
    Protein Engineering Design and Selection, vol. 20, no. 9, pp. 417–423, 2007
  21. Digital Coding of Amino Acids Based on Hydrophobic Index
    Protein and Peptide Letters, vol. 14, no. 9, pp. 871–875, 2007
  22. Gpos-PLoc: an ensemble classifier for predicting subcellular localization of Gram-positive bacterial proteins
    Protein Engineering Design and Selection, vol. 20, no. 1, pp. 39–46, 2007
  23. Nuc-PLoc: a new web-server for predicting protein subnuclear localization by fusing PseAA composition and PsePSSM
    Protein Engineering Design and Selection, vol. 20, no. 11, pp. 561–567, 2007
  24. Methodology development for predicting subcellular localization and other attributes of proteins
    Expert Review of Proteomics, vol. 4, no. 4, pp. 453–463, 2007
  25. Inhibitor Design for SARS Coronavirus Main Protease Based on “Distorted Key Theory”
    Medicinal Chemistry, vol. 3, no. 1, pp. 1–6, 2007
  26. Agaritine and Its Derivatives Are Potential Inhibitors against HIV Proteases
    Medicinal Chemistry, vol. 3, no. 3, pp. 221–226, 2007
  27. Screening for New Agonists Against Alzheimer's Disease
    Medicinal Chemistry, vol. 3, no. 5, pp. 488–493, 2007
  28. Molecular Modeling Studies of Peptide Drug Candidates against SARS
    Medicinal Chemistry, vol. 2, no. 3, pp. 309–314, 2006
  29. Ensemble classifier for protein fold pattern recognition
    Bioinformatics, vol. 22, no. 14, pp. 1717–1722, 2006
  30. Journal of Proteome Research, vol. 5, no. 8, pp. 1888–1897, 2006
  31. Progress in Computational Approach to Drug Development Against SARS
    Current Medicinal Chemistry, vol. 13, no. 27, pp. 3263–3270, 2006
  32. Predicting Protein Structural Class with AdaBoost Learner
    Protein and Peptide Letters, vol. 13, no. 5, pp. 489–492, 2006
  33. Journal of Proteome Research, vol. 5, no. 2, pp. 316–322, 2006
  34. Journal of Proteome Research, vol. 5, no. 12, pp. 3420–3428, 2006
  35. Fuzzy KNN for predicting membrane protein types from pseudo-amino acid composition
    Journal of Theoretical Biology, vol. 240, no. 1, pp. 9–13, 2006
  36. Using stacked generalization to predict membrane protein types based on pseudo-amino acid composition
    Journal of Theoretical Biology, vol. 242, no. 4, pp. 941–946, 2006
  37. Using LogitBoost classifier to predict protein structural classes
    Journal of Theoretical Biology, vol. 238, no. 1, pp. 172–176, 2006
  38. Hum-PLoc: A novel ensemble classifier for predicting human protein subcellular localization
    Biochemical and Biophysical Research Communications, vol. 347, no. 1, pp. 150–157, 2006
  39. A novel fingerprint map for detecting SARS-CoV
    Journal of Pharmaceutical and Biomedical Analysis, vol. 41, no. 1, pp. 246–250, 2006
  40. A probability cellular automaton model for hepatitis B viral infections
    Biochemical and Biophysical Research Communications, vol. 342, no. 2, pp. 605–610, 2006
  41. Insights from modeling the 3D structure of H5N1 influenza virus neuraminidase and its binding interactions with ligands?
    Biochemical and Biophysical Research Communications, vol. 344, no. 3, pp. 1048–1055, 2006
  42. Prediction of protease types in a hybridization space
    Biochemical and Biophysical Research Communications, vol. 339, no. 3, pp. 1015–1020, 2006
  43. Prediction of protein subcellular location using hydrophobic patterns of amino acid sequence
    Computational Biology and Chemistry, vol. 30, no. 5, pp. 367–371, 2006
  44. Heuristic molecular lipophilicity potential (HMLP): Lipophilicity and hydrophilicity of amino acid side chains
    Journal of Computational Chemistry, vol. 27, no. 6, pp. 685–692, 2006
  45. Using pseudo amino acid composition to predict protein structural classes: Approached with complexity measure factor
    Journal of Computational Chemistry, vol. 27, no. 4, pp. 478–482, 2006
  46. Predicting protein subcellular location by fusing multiple classifiers
    Journal of Cellular Biochemistry, vol. 99, no. 2, pp. 517–527, 2006
  47. Heuristic molecular lipophilicity potential (HMLP): A 2D-QSAR study to LADH of molecular family pyrazole and derivatives
    Journal of Computational Chemistry, vol. 26, no. 5, pp. 461–470, 2005
  48. Using Fourier Spectrum Analysis and Pseudo Amino Acid Composition for Prediction of Membrane Protein Types
    The Protein Journal, vol. 24, no. 6, pp. 385–389, 2005
  49. Boosting classifier for predicting protein domain structural class
    Biochemical and Biophysical Research Communications, vol. 334, no. 1, pp. 213–217, 2005
  50. Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition
    Biochemical and Biophysical Research Communications, 2005
  51. Prediction of protein signal sequences and their cleavage sites by statistical rulers
    Biochemical and Biophysical Research Communications, vol. 338, no. 2, pp. 1005–1011, 2005
  52. Theoretical studies of Alzheimer’s disease drug candidate 3-[(2,4-dimethoxy)benzylidene]-anabaseine (GTS-21) and its derivatives
    Biochemical and Biophysical Research Communications, vol. 338, no. 2, pp. 1059–1064, 2005
  53. Corrigendum to ?Predicting protein structural class by functional domain composition? [Biochem. Biophys. Res. Commun. 321 (2004) 1007?1009]
    Biochemical and Biophysical Research Communications, vol. 329, no. 4, pp. 1362–1362, 2005
  54. Low-frequency Fourier spectrum for predicting membrane protein types
    Biochemical and Biophysical Research Communications, vol. 336, no. 3, pp. 737–739, 2005
  55. Using GO-PseAA predictor to identify membrane proteins and their types
    Biochemical and Biophysical Research Communications, vol. 327, no. 3, pp. 845–847, 2005
  56. Using cellular automata to generate image representation for biological sequences
    Amino Acids, vol. 28, no. 1, pp. 29–35, 2005
  57. Modeling the tertiary structure of human cathepsin-E
    Biochemical and Biophysical Research Communications, vol. 331, no. 1, pp. 56–60, 2005
  58. SLLE for predicting membrane protein types
    Journal of Theoretical Biology, vol. 232, no. 1, pp. 7–15, 2005
  59. Predicting enzyme family classes by hybridizing gene product composition and pseudo-amino acid composition
    Journal of Theoretical Biology, vol. 234, no. 1, pp. 145–149, 2005
  60. Using optimized evidence-theoretic K-nearest neighbor classifier and pseudo-amino acid composition to predict membrane protein types
    Biochemical and Biophysical Research Communications, vol. 334, no. 1, pp. 288–292, 2005
  61. Assessment of chemical libraries for their druggability
    Computational Biology and Chemistry, vol. 29, no. 1, pp. 55–67, 2005
  62. Molecular modeling and chemical modification for finding peptide inhibitor against severe acute respiratory syndrome coronavirus main proteinase
    Analytical Biochemistry, vol. 337, no. 2, pp. 262–270, 2005
  63. Using supervised fuzzy clustering to predict protein structural classes
    Biochemical and Biophysical Research Communications, vol. 334, no. 2, pp. 577–581, 2005
  64. Predicting membrane protein type by functional domain composition and pseudo-amino acid composition
    Journal of Theoretical Biology, 2005
  65. Journal of Proteome Research, vol. 4, no. 3, pp. 967–971, 2005
  66. An application of gene comparative image for predicting the effect on replication ratio by HBV virus gene missense mutation
    Journal of Theoretical Biology, vol. 235, no. 4, pp. 555–565, 2005
  67. Journal of Chemical Information and Modeling , vol. 45, no. 2, pp. 407–413, 2005
  68. Journal of Proteome Research, vol. 4, no. 1, pp. 109–111, 2005
  69. Journal of Proteome Research, vol. 4, no. 4, pp. 1413–1418, 2005
  70. Journal of Proteome Research, vol. 4, no. 5, pp. 1681–1686, 2005
  71. Using amphiphilic pseudo amino acid composition to predict enzyme subfamily classes
    Bioinformatics, vol. 21, no. 1, pp. 10–19, 2005
  72. A New Nucleotide-composition Based Fingerprint of SARS-CoV with Visualization Analysis
    Medicinal Chemistry, vol. 1, no. 1, pp. 39–47, 2005
  73. Application of Bioinformatics in Search for Cleavable Peptides of SARSCoV Mpro and Chemical Modification of Octapeptides
    Medicinal Chemistry, vol. 1, no. 3, pp. 209–213, 2005
  74. Editorial [Hot Topic: Biomedicine & Bioinformatics (Guest Editor: Kuo-Chen Chou)]
    Current Protein and Peptide Science, vol. 6, no. 5, pp. 397–398, 2005
  75. Computational Methods for Protein-Protein Interaction and their Application
    Current Protein and Peptide Science, vol. 6, no. 5, pp. 443–449, 2005
  76. Pattern Recognition Methods for Protein Functional Site Prediction
    Current Protein and Peptide Science, vol. 6, no. 5, pp. 479–491, 2005
  77. HIV-1 gp120 V3 Loop for Structure-Based Drug Design
    Current Protein and Peptide Science, vol. 6, no. 5, pp. 413–422, 2005
  78. Progress in Protein Structural Class Prediction and its Impact to Bioinformatics and Proteomics
    Current Protein and Peptide Science, vol. 6, no. 5, pp. 423–436, 2005
  79. Polyprotein cleavage mechanism of SARS CoV M and chemical modification of the octapeptide
    Peptides, vol. 25, no. 11, pp. 1857–1864, 2004
  80. Predicting the linkage sites in glycoproteins using bio-basis function neural network
    Bioinformatics, vol. 20, no. 6, pp. 903–908, 2004
  81. Predicting subcellular localization of proteins in a hybridization space
    Bioinformatics, vol. 20, no. 7, pp. 1151–1156, 2004
  82. Predicting enzyme family class in a hybridization space
    Protein Science, vol. 13, no. 11, pp. 2857–2863, 2004
  83. Bio-support vector machines for computational proteomics
    Bioinformatics, vol. 20, no. 5, pp. 735–741, 2004
  84. Journal of Chemical Information and Computer Sciences, vol. 44, no. 3, pp. 1111–1122, 2004
  85. Journal of Proteome Research, vol. 3, no. 6, pp. 1284–1288, 2004
  86. Journal of Proteome Research, vol. 3, no. 5, pp. 1069–1072, 2004
  87. Weighted-support vector machines for predicting membrane protein types based on pseudo-amino acid composition
    Protein Engineering Design and Selection, vol. 17, no. 6, pp. 509–516, 2004
  88. Journal of Proteome Research, vol. 3, no. 4, pp. 856–861, 2004
  89. Predicting protein localization in budding Yeast
    Bioinformatics, vol. 21, no. 7, pp. 944–950, 2004
  90. Identify catalytic triads of serine hydrolases by support vector machines
    Journal of Theoretical Biology, vol. 228, no. 4, pp. 551–557, 2004
  91. Insights from modelling the 3D structure of the extracellular domain of $alpha;7 nicotinic acetylcholine receptor*1
    Biochemical and Biophysical Research Communications, vol. 319, no. 2, pp. 433–438, 2004
  92. Application of SVM to predict membrane protein types
    Journal of Theoretical Biology, vol. 226, no. 4, pp. 373–376, 2004
  93. Using complexity measure factor to predict protein subcellular location
    Amino Acids, vol. 28, no. 1, pp. 57–61, 2004
  94. Modelling extracellular domains of GABA-A receptors: subtypes 1, 2, 3, and 5
    Biochemical and Biophysical Research Communications, vol. 316, no. 3, pp. 636–642, 2004
  95. Predicting 22 protein localizations in budding yeast
    Biochemical and Biophysical Research Communications, vol. 323, no. 2, pp. 425–428, 2004
  96. Using GO-PseAA predictor to predict enzyme sub-class
    Biochemical and Biophysical Research Communications, vol. 325, no. 2, pp. 506–509, 2004
  97. Prediction of protein subcellular locations by GO?FunD?PseAA predictor
    Biochemical and Biophysical Research Communications, vol. 320, no. 4, pp. 1236–1239, 2004
  98. Predicting protein structural class by functional domain composition
    Biochemical and Biophysical Research Communications, vol. 321, no. 4, pp. 1007–1009, 2004
  99. Predicting subcellular localization of proteins by hybridizing functional domain composition and pseudo-amino acid composition
    Journal of Cellular Biochemistry, vol. 91, no. 6, pp. 1197–1203, 2004
  100. A novel approach to predict active sites of enzyme molecules
    Proteins: Structure, Function, and Bioinformatics, vol. 55, no. 1, pp. 77–82, 2004
  101. Prediction of protein secondary structure content by artificial neural network
    Journal of Computational Chemistry, vol. 24, no. 6, pp. 727–731, 2003
  102. Predicting protein quaternary structure by pseudo amino acid composition
    Proteins: Structure, Function, and Genetics, vol. 53, no. 2, pp. 282–289, 2003
  103. Prediction and classification of protein subcellular location?sequence-order effect and pseudo amino acid composition
    Journal of Cellular Biochemistry, vol. 90, no. 6, pp. 1250–1260, 2003
  104. Erratum to “Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS” [Biochem. Biophys. Res. Commun. 308 (2003) 148–151]
    Biochemical and Biophysical Research Communications, vol. 310, no. 2, p. 675, 2003
  105. Support Vector Machines for Prediction of Protein Domain Structural Class
    Journal of Theoretical Biology, vol. 221, no. 1, pp. 115–120, 2003
  106. A new hybrid approach to predict subcellular localization of proteins by incorporating gene ontology
    Biochemical and Biophysical Research Communications, vol. 311, no. 3, pp. 743–747, 2003
  107. Nearest neighbour algorithm for predicting protein subcellular location by combining functional domain composition and pseudo-amino acid composition
    Biochemical and Biophysical Research Communications, vol. 305, no. 2, pp. 407–411, 2003
  108. Correlations of amino acids in proteins
    Peptides, vol. 24, no. 12, pp. 1863–1869, 2003
  109. Journal of Proteome Research, vol. 2, no. 3, pp. 331–331, 2003
  110. Support Vector Machine for predicting a-turn types
    Peptides, vol. 24, no. 4, pp. 629–630, 2003
  111. Support vector machines for prediction of protein signal sequences and their cleavage sites
    Peptides, vol. 24, no. 1, pp. 159–161, 2003
  112. Binding mechanism of coronavirus main proteinase with ligands and its implication to drug design against SARS
    Biochemical and Biophysical Research Communications, vol. 308, no. 1, pp. 148–151, 2003
  113. Journal of Chemical Information and Computer Sciences, vol. 43, no. 6, pp. 1748–1753, 2003
  114. Prediction of ß-turns with learning machines
    Peptides, vol. 24, no. 5, pp. 665–669, 2003
  115. Journal of Proteome Research, vol. 2, no. 2, pp. 183–190, 2003
  116. Prediction of Protein Signal Sequences
    Current Protein & Peptide Science, vol. 3, no. 6, pp. 615–622, 2002
  117. Journal of Proteome Research, vol. 1, no. 5, pp. 429–433, 2002
  118. Using Functional Domain Composition and Support Vector Machines for Prediction of Protein Subcellular Location
    Journal of Biological Chemistry, vol. 277, no. 48, pp. 45765–45769, 2002
  119. Artificial neural network model for predicting protein subcellular location
    Computers & Chemistry, vol. 26, no. 2, pp. 179–182, 2002
  120. Prediction of protein structural classes by support vector machines
    Computers & Chemistry, vol. 26, no. 3, pp. 293–296, 2002
  121. Support vector machines for predicting the specificity of GalNAc-transferase
    Peptides, vol. 23, no. 1, pp. 205–208, 2002
  122. Artificial neural network method for predicting protein secondary structure content
    Computers & Chemistry, vol. 26, no. 4, pp. 347–350, 2002
  123. Prediction of the Tertiary Structure of the ß-Secretase Zymogen
    Biochemical and Biophysical Research Communications, vol. 292, no. 3, pp. 702–708, 2002
  124. Support vector machines for prediction of protein subcellular location by incorporating quasi-sequence-order effect
    Journal of Cellular Biochemistry, vol. 84, no. 2, pp. 343–348, 2002
  125. Identification of the N-terminal functional domains of Cdk5 by molecular truncation and computer modeling
    Proteins: Structure, Function, and Genetics, vol. 48, no. 3, pp. 447–453, 2002
  126. Support vector machines for the classification and prediction of ?-turn types
    Journal of Peptide Science, vol. 8, no. 7, pp. 297–301, 2002
  127. Prediction of protein cellular attributes using pseudo-amino acid composition
    Proteins: Structure, Function, and Genetics, vol. 44, no. 1, pp. 60–60, 2001
  128. Support vector machines for predicting HIV protease cleavage sites in protein
    Journal of Computational Chemistry, vol. 23, no. 2, pp. 267–274, 2001
  129. Prediction of protein cellular attributes using pseudo-amino acid composition
    Proteins: Structure, Function, and Genetics, vol. 43, no. 3, pp. 246–255, 2001
  130. Prediction of signal peptides using scaled window
    Peptides, vol. 22, no. 12, pp. 1973–1979, 2001
  131. Using neural networks for prediction of domain structural classes
    Biochimica et Biophysica Acta (BBA) - Protein Structure and Molecular Enzymology, vol. 1476, no. 1, pp. 1–2, 2000
  132. Prediction of the tertiary structure of a caspase-9/inhibitor complex
    FEBS Letters, vol. 470, no. 3, pp. 249–256, 2000
  133. Prediction of protein signal sequences and their cleavage sites
    Proteins: Structure, Function, and Genetics, vol. 42, no. 1, pp. 136–139, 2000
  134. Prediction of Tight Turns and Their Types in Proteins
    Analytical Biochemistry, vol. 286, no. 1, pp. 1–16, 2000
  135. Prediction of Protein Subcellular Locations by Incorporating Quasi-Sequence-Order Effect
    Biochemical and Biophysical Research Communications, vol. 278, no. 2, pp. 477–483, 2000
  136. Using Neural Networks for Prediction of Subcellular Location of Prokaryotic and Eukaryotic Proteins
    Molecular Cell Biology Research Communications, vol. 4, no. 3, pp. 172–173, 2000
  137. Support Vector Machines for Prediction of Protein Subcellular Location
    Molecular Cell Biology Research Communications, vol. 4, no. 4, pp. 230–233, 2000
  138. Prediction of Protein Structural Classes and Subcellular Locations
    Current Protein and Peptide Science, vol. 1, no. 2, pp. 171–208, 2000
  139. A Model of the Complex between Cyclin-Dependent Kinase 5 and the Activation Domain of Neuronal Cdk5 Activator
    Biochemical and Biophysical Research Communications, vol. 259, no. 2, pp. 420–428, 1999
  140. Prediction of membrane protein types and subcellular locations
    Proteins: Structure, Function, and Genetics, vol. 34, no. 1, pp. 137–153, 1999
  141. Artificial Neural Network Model for Predicting a-Turn Types
    Analytical Biochemistry, vol. 268, no. 2, pp. 407–409, 1999
  142. A Key Driving Force in Determination of Protein Structural Classes
    Biochemical and Biophysical Research Communications, vol. 264, no. 1, pp. 216–224, 1999
  143. Classification and prediction of ß–turn types by neural network
    Advances in Engineering Software, vol. 30, no. 5, pp. 347–352, 1999
  144. Journal of Protein Chemistry, vol. 18, no. 4, pp. 473–480, 1999
  145. Artificial neural network model for predicting HIV protease cleavage sites in protein
    Advances in Engineering Software, vol. 29, no. 2, pp. 119–128, 1998
  146. Journal of Protein Chemistry, vol. 17, no. 3, pp. 209–217, 1998
  147. Using Discriminant Function for Prediction of Subcellular Location of Prokaryotic Proteins
    Biochemical and Biophysical Research Communications, vol. 252, no. 1, pp. 63–68, 1998
  148. Artificial neural network method for predicting HIV protease cleavage sites in protein
    Journal of Protein Chemistry, vol. 17, no. 7, pp. 607–615, 1998
  149. Journal of Protein Chemistry, vol. 17, no. 4, pp. 363–376, 1998
  150. Prediction of the tertiary structure and substrate binding site of caspase-8
    FEBS Letters, vol. 419, no. 1, pp. 49–54, 1997
  151. Journal of Protein Chemistry, vol. 16, no. 7, pp. 689–700, 1997
  152. Journal of Protein Chemistry, vol. 16, no. 8, pp. 765–773, 1997
  153. Journal of Protein Chemistry, vol. 16, no. 6, pp. 575–595, 1997
  154. The benzylthio-pyrimidine U-31,355, a potent inhibitor of HIV-1 reverse transcriptase
    Biochemical Pharmacology, vol. 51, no. 6, pp. 743–750, 1996
  155. Beat motion in DNA double helix and a mechanism of energy exchange between its two strands with microwave frequency
    Chemical Physics, vol. 206, no. 3, pp. 271–277, 1996
  156. Artificial Neural Network Model for Predicting the Specificity of GalNAc-transferase
    Analytical Biochemistry, vol. 243, no. 2, pp. 284–285, 1996
  157. Prediction of Human Immunodeficiency Virus Protease Cleavage Sites in Proteins
    Analytical Biochemistry, vol. 233, no. 1, pp. 1–14, 1996
  158. Predicting human immunodeficiency virus protease cleavage sites in proteins by a discriminant function method
    Proteins: Structure, Function, and Genetics, vol. 24, no. 1, pp. 51–72, 1996
  159. Neural Network Prediction of the HIV-1 Protease Cleavage Sites
    Journal of Theoretical Biology, vol. 177, no. 4, pp. 369–379, 1995
  160. The convergence-divergence duality in lectin domains of selectin family and its implications
    FEBS Letters, vol. 363, no. 1-2, pp. 123–126, 1995
  161. Does the folding type of a protein depend on its amino acid composition?
    FEBS Letters, vol. 363, no. 1-2, pp. 127–131, 1995