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Research Article

HMEC: A Heuristic Algorithm for Individual Haplotyping with Minimum Error Correction

Table 8

Comparison of different haplotyping techniques using ReHap. Min Len = 10, Max Len = 30, coverage = 8. Highest reconstruction rate for each error rate is shown in bold.
Error rate SpeedHap FastHare MLF 2-Distance MEC SHR HMEC HapCUT
0.2 0.98 0.975 0.985 0.985 0.84 0.985 0.87
0.3 0.985 0.985 0.97 0.97 0.74 0.97 0.865
0.4 0.895 0.79 0.885 0.885 0.675 0.87 0.84
0.5 0.74 0.47 0.76 0.76 0.51 0.705 0.79