NovelSNPer: A Fast Tool for the Identification and Characterization of Novel SNPs and InDels

Table 3

Example basic output file. NovelSNPer generates the output file Output_basic.txt with one line per variation.

Name	Chr	Start	End	Region	Type	FuncClass	NearestGene	Status	rsID
var1	12	12483171	12483171	CODING_REGION	SNP	SYNONYMOUS_CODING	MANSC1	KNOWN	rs113135329
var2	12	12483200	12483200	CODING_REGION	SNP	NON_SYNONYMOUS...	MANSC1	NOVEL	NA
var3	12	12506184	12506184	DOWNSTREAM	INDEL	NONE	LOH12CR2	KNOWN	rs113229925,; rs11313889
var4	12	12527105	12527108	INTRONIC	INVERSION	NONE	LOH12CR1	NOVEL	NA
var5	12	12550471	12550471	INTRONIC	SNP	NONE	LOH12CR1	NOVEL	NA
var6	12	12588583	12588583	CODING_REGION	SNP	NON_SYNONYMOUS...	LOH12CR1	KNOWN	rs76204637
var7	12	12588586	12588587	CODING_REGION	INDEL	FRAMESHIFT	LOH12CR1	NOVEL	NA