Table 3: Example basic output file. NovelSNPer generates the output file Output_basic.txt with one line per variation.

NameChr Start End Region Type FuncClass NearestGene Status rsID

var1 12 12483171 12483171 CODING_REGION SNP SYNONYMOUS_CODING MANSC1 KNOWN rs113135329
var2 12 12483200 12483200 CODING_REGION SNP NON_SYNONYMOUS... MANSC1 NOVEL NA
var3 12 12506184 12506184 DOWNSTREAM INDEL NONE LOH12CR2 KNOWN rs113229925,
rs11313889
var4 12 12527105 12527108 INTRONIC INVERSION NONE LOH12CR1 NOVEL NA
var5 12 12550471 12550471 INTRONIC SNP NONE LOH12CR1 NOVEL NA
var6 12 12588583 12588583 CODING_REGION SNP NON_SYNONYMOUS... LOH12CR1 KNOWN rs76204637
var7 12 12588586 12588587 CODING_REGION INDEL FRAMESHIFT LOH12CR1 NOVEL NA