Table 5: Ambiguous short indels. Multiple deletion annotation on human chromosome 12. The deleted nucleotide A is underlined in the reference sequence. In the new sequence a gap at the position of the deletion is shown.

Name Position refAllele Allele Reference sequence Alternative sequence

rs71918324 6551619 A TCTCAAAAAAAAAAAAAAAAAAAAGAAC TCTC AAAAAAAAAAAAAAAAAAAGAAC
rs71702364 6551627 A TCTCAAAAAAAAAAAAAAAAAAAAGAAC TCTCAAAAAAAA AAAAAAAAAAAGAAC
rs5796236 6551628 A TCTCAAAAAAAAAAAAAAAAAAAAGAAC TCTCAAAAAAAAA AAAAAAAAAAGAAC
rs35226411 6551629 A TCTCAAAAAAAAAAAAAAAAAAAAGAAC TCTCAAAAAAAAAA AAAAAAAAAGAAC
rs72397401 6551630 A TCTCAAAAAAAAAAAAAAAAAAAAGAAC TCTCAAAAAAAAAAA AAAAAAAAGAAC
rs35471040 6551638 A TCTCAAAAAAAAAAAAAAAAAAAAGAAC TCTCAAAAAAAAAAAAAAAAAAA GAAC