CMD: A Database to Store the Bonding States of Cysteine Motifs with Secondary Structures

Figure 2

Annotated diagram of “Search By FASTA Sequence” section showing all search options and filtering criteria. (A) Users can choose either PDB or SwissProt. (B) Users can enter single or multiple FASTA sequences to be investigated for each motif inside. (C) Users can also upload a FASTA format file to be investigated. (D) Users can choose the number of amino acid residues on each side of cysteine for motif extraction process within the FASTA sequence. (E) Users can filter the proteins in which the motif will be investigated. User can specify whether the protein was engineered or mutated and choose whether the protein contains any DNA or RNA link. They can also filter out the similar proteins and keep only one identical copy of them for advanced investigations.