Research Article
A Topology-Based Metric for Measuring Term Similarity in the
Gene Ontology
Table 3
Area under ROC curves (AUCs) and precision for the human PPI dataset. For each group, the top score is in bold.
| Approaches | Area under curve (AUC) | Precision | Accuracy | Excluding IEA | Including IEA | Excluding IEA | Including IEA | Excluding IEA | Including IEA |
| GO-universal | 0.962 | 0.954 | 0.841 | 0.772 | 0.885 | 0.816 | Resnik | 0.933 | 0.931 | 0.724 | 0.701 | 0.713 | 0.739 | Lin | 0.763 | 0.691 | 0.610 | 0.568 | 0.481 | 0.549 |
| SimUIC | 0.983 | 0.986 | 0.930 | 0.916 | 0.977 | 0.979 | SimGIC | 0.983 | 0.986 | 0.922 | 0.917 | 0.974 | 0.974 | SimUI | 0.975 | 0.978 | 0.866 | 0.845 | 0.926 | 0.937 |
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