Advances in Bioinformatics

Research Article

Efficient Serial and Parallel Algorithms for Selection of Unique Oligos in EST Databases

Algorithm 8

goo( ).
(1) posi a list of positions of qmer in D
 ( where corresponds to position of sequence )
(2) for   to length( )  do
(3) for   to length( )  do
(4)  if     then
(5)    list of -mers generated from the extension of the in position
(6)    list of -mers generated from the extension of the in position
(7)   for   to length( )  do
(8)    for   to length( )  do
(9)     if     then
(10)      mark the as non-unique
(11)      end if
(12)    end for
(13)   end for
(14)  end if
(15) end for
(16) end for