Research Article
Comparative Genomics of Ten Solanaceous Plastomes
Table 2
The lengths of introns and exons for the split genes of ten solanaceous species.
| Gene (region) | Exon/intron | ABE | CAN | DST | NSY | NTA | NTO | NUN | SBU | SLY | STU |
| trnK-UUU (LSC) | Exon I | 37 | 37 | 37 | 37 | 37 | 37 | 37 | 37 | 37 | 37 | Intron I | 2519 | 2500 | 2506 | 2526 | 2526 | 2526 | 2521 | 2501 | 2514 | 2512 | Exon II | 36 | 35 | 35 | 35 | 35 | 35 | 35 | 35 | 35 | 35 |
| rps16 (LSC) | Exon I | 40 | 40 | 40 | 40 | 40 | 40 | 40 | 40 | 40 | 40 | Intron I | 822 | 865 | 866 | 860 | 860 | 860 | 859 | 855 | 864 | 855 | Exon II | 227 | 227 | 227 | 218 | 218 | 218 | 218 | 227 | 227 | 227 |
| trnG-UCC (LSC) | Exon I | 23 | 23 | 23 | 23 | 23 | 23 | 23 | 23 | 23 | 23 | Intron I | 692 | 692 | 694 | 692 | 692 | 690 | 691 | 701 | 695 | 692 | Exon II | 48 | 48 | 48 | 48 | 48 | 48 | 48 | 37 | 48 | 48 |
| atpF (LSC) | Exon I | 145 | 145 | 145 | 145 | 145 | 145 | 145 | 144 | 144 | 145 | Intron I | 715 | 693 | 700 | 695 | 695 | 692 | 692 | 693 | 686 | 693 | Exon II | 410 | 410 | 410 | 410 | 410 | 410 | 410 | 411 | 411 | 410 |
| rpoC1 (LSC) | Exon I | 432 | 453 | 453 | 453 | 453 | 432 | 453 | 453 | 453 | 453 | Intron I | 737 | 742 | 737 | 737 | 737 | 709 | 733 | 737 | 737 | 737 | Exon II | 1614 | 1614 | 1614 | 1614 | 1614 | 1614 | 1623 | 1614 | 1614 | 1614 |
| ycf3 (LSC) | Exon I | 124 | 124 | 124 | 124 | 124 | 124 | 124 | 124 | 124 | 124 | Intron I | 739 | 742 | 740 | 739 | 738 | 731 | 735 | 730 | 729 | 727 | Exon II | 230 | 230 | 230 | 230 | 230 | 230 | 230 | 230 | 230 | 230 | Intron II | 763 | 744 | 753 | 783 | 783 | 779 | 781 | 750 | 750 | 750 | Exon III | 153 | 153 | 159 | 153 | 153 | 153 | 153 | 153 | 153 | 153 |
| trnL-UAA (LSC) | Exon I | 35 | 35 | 35 | 35 | 35 | 35 | 35 | 37 | 35 | 35 | Intron I | 497 | 426 | 501 | 503 | 503 | 497 | 498 | 502 | 497 | 497 | Exon II | 50 | 50 | 50 | 50 | 50 | 50 | 50 | 50 | 50 | 50 |
| trnV-UAC (LSC) | Exon I | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 38 | Intron I | 572 | 575 | 569 | 571 | 571 | 572 | 573 | 569 | 571 | 571 | Exon II | 35 | 35 | 37 | 35 | 35 | 35 | 35 | 37 | 35 | 35 |
| rps12* | Exon I | 114 | 114 | 114 | 114 | 114 | 114 | 114 | 114 | 114 | 114 | Intron I | — | — | — | — | — | — | — | — | — | — | Exon II | 232 | 232 | 232 | 232 | 232 | 232 | 232 | 232 | 232 | 232 | Intron II | 535 | 536 | 536 | 536 | 536 | 536 | 536 | 536 | 536 | 536 | Exon III | 26 | 26 | 26 | 26 | 26 | 26 | 26 | 26 | 26 | 26 |
| clpP (LSC) | Exon I | 71 | 71 | 71 | 71 | 71 | 71 | 71 | 71 | 71 | 71 | Intron I | 799 | 811 | 792 | 807 | 807 | 789 | 789 | 789 | 798 | 789 | Exon II | 292 | 292 | 292 | 292 | 292 | 292 | 292 | 292 | 292 | 292 | Intron II | 622 | 626 | 624 | 637 | 637 | 634 | 631 | 625 | 617 | 620 | Exon III | 228 | 228 | 234 | 228 | 228 | 228 | 228 | 234 | 258 | 234 |
| petB (LSC) | Exon I | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | 6 | Intron I | 759 | 755 | 746 | 753 | 753 | 753 | 753 | 747 | 747 | 747 | Exon II | 642 | 642 | 642 | 642 | 642 | 642 | 642 | 642 | 642 | 642 |
| petD (LSC) | Exon I | 8 | 8 | 9 | 8 | 8 | 8 | 8 | 6 | 8 | 8 | Intron I | 742 | 742 | 748 | 742 | 742 | 742 | 742 | 739 | 738 | 739 | Exon II | 475 | 475 | 474 | 475 | 475 | 475 | 475 | 477 | 475 | 475 |
| rpl16 (LSC) | Exon I | 9 | 9 | 9 | 9 | 9 | 9 | 9 | 9 | 9 | 9 | Intron I | 1019 | 1026 | 1025 | 1020 | 1020 | 1021 | 1020 | 1014 | 1018 | 1014 | Exon II | 396 | 396 | 396 | 396 | 396 | 396 | 396 | 396 | 396 | 396 |
| rpl2 (IR) | Exon I | 391 | 391 | 393 | 391 | 391 | 391 | 391 | 390 | 391 | 391 | Intron I | 664 | 665 | 669 | 666 | 666 | 666 | 666 | 666 | 666 | 666 | Exon II | 434 | 434 | 429 | 434 | 434 | 434 | 434 | 435 | 434 | 434 |
| ndhB (IR) | Exon I | 777 | 777 | 777 | 777 | 777 | 777 | 777 | 777 | 777 | 777 | Intron I | 679 | 679 | 679 | 679 | 679 | 679 | 679 | 679 | 679 | 679 | Exon II | 756 | 756 | 756 | 756 | 756 | 756 | 756 | 756 | 756 | 756 |
| trnI-GAU (IR) | Exon I | 37 | 37 | 42 | 37 | 37 | 37 | 37 | 42 | 37 | 37 | Intron I | 717 | 722 | 717 | 707 | 707 | 716 | 716 | 717 | 722 | 722 | Exon II | 34 | 35 | 35 | 35 | 35 | 35 | 35 | 35 | 35 | 35 |
| trnA-UGC (IR) | Exon I | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 38 | 38 | Intron I | 681 | 811 | 811 | 709 | 709 | 709 | 709 | 811 | 811 | 811 | Exon II | 35 | 35 | 35 | 35 | 35 | 35 | 35 | 35 | 35 | 35 |
| ndhA (SSC) | Exon I | 553 | 553 | 552 | 553 | 553 | 553 | 553 | 552 | 553 | 553 | Intron I | 1150 | 1157 | 1154 | 1148 | 1148 | 1149 | 1148 | 1158 | 1133 | 1158 | Exon II | 539 | 539 | 537 | 539 | 539 | 539 | 539 | 540 | 539 | 539 |
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rps12 gene is dividing gene. The 3′-rps12 locates on the IR-region, while the 5′-rps12 locates on the LSC region. ABE: Atropa belladonna, CAN: Capsicum annuum, DST: Datura stramonium, NSY: Nicotiana sylvestris, NTA: Nicotiana tabacum, NTO: Nicotiana tomentosiformis, NUN: Nicotiana undulata, SBU: Solanum bulbocastanum, SLY: Solanum lycopersicum, and STU: Solanum tuberosum.
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