Research Article
An Optimal Seed Based Compression Algorithm for DNA Sequences
Table 2
Comparison of compression ratios of the proposed method against existing methods [
2,
8,
12,
18,
19,
21,
22,
24].
| | Sequence | Length | CDNA | GeMNL | Bioc | CTW + LZ | GenC | DNAC | DNAP | XM | Proposed seed based method |
| | HUMDYSTROP | 38,770 | 1.93 | 1.9085 | 1.9262 | 1.9175 | 1.9231 | 1.9116 | 1.9088 | 1.9031 | 1.8624 | | HUMGHCSA | 66,496 | 0.95 | 1.0089 | 1.3072 | 1.0972 | 1.0969 | 1.0272 | 1.639 | 0.9828 | 1.0156 | | HUMHBB | 73,308 | 1.77 | — | 1.8800 | 1.8082 | 1.8204 | 1.7897 | 1.7771 | 1.7513 | 1.7364 | | HUMHDABCD | 58,863 | 1.67 | 1.7059 | 1.8770 | 1.8218 | 1.8192 | 1.7951 | 1.7394 | 1.6671 | 1.6237 | | HUMHPRTB | 56,832 | 1.72 | 1.7639 | 1.9066 | 1.8433 | 1.8466 | 1.8165 | 1.7886 | 1.7361 | 1.688 | | MPOMTCG | 1,86,609 | 1.87 | 1.8822 | 1.9378 | 1.9000 | 1.9058 | 1.8920 | 1.8932 | 1.8768 | 1.763 | | VACCG | 1,91,735 | 1.81 | 1.7644 | 1.7614 | 1.7616 | 1.7614 | 1.7580 | 1.7583 | 1.6749 | 1.6434 |
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