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Citations to this Journal [896 citations: 1–100 of 862 articles]

Articles published in Advances in Bioinformatics have been cited 896 times. The following is a list of the 862 articles that have cited the articles published in Advances in Bioinformatics.

  • Taegun Kwon, J. Alan Sparks, Jin Nakashima, Stacy N. Allen, Yuhong Tang, and Elison B. Blancaflor, “Transcriptional Response Of Arabidopsis Seedlings During Spaceflight Reveals Peroxidase And Cell Wall Remodeling Genes Associated With Root Hair Devel,” American Journal Of Botany, vol. 102, no. 1, pp. 21–35, 2015. View at Publisher · View at Google Scholar
  • E. Sobieszczuk-Nowicka, A. Zmienko, A. Samelak-Czajka, M. Łuczak, M. Pietrowska-Borek, R. Iorio, S. Del Duca, M. Figlerowicz, and J. Legocka, “Dark-induced senescence of barley leaves involves activation of plastid transglutaminases,” Amino Acids, 2015. View at Publisher · View at Google Scholar
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  • Tae-Hyuk Ahn, Juanjuan Chai, and Chongle Pan, “Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance,” Bioinformatics, vol. 31, no. 2, pp. 170–177, 2015. View at Publisher · View at Google Scholar
  • Yu-Pin Lin, Dongpo Deng, Wei-Chih Lin, Rob Lemmens, Neville D. Crossman, Klaus Henle, and Dirk S. Schmeller, “Uncertainty analysis of crowd-sourced and professionally collected field data used in species distribution models of Taiwanese moths,” Biological Conservation, vol. 181, pp. 102–110, 2015. View at Publisher · View at Google Scholar
  • Xiangyang Li, Jing Liu, Xia Yang, Yan Ding, Jian Wu, Deyu Hu, and Baoan Song, “Studies of Binding Interactions between Dufulin and Southern Rice Black-Streaked Dwarf Virus P9-1,” Bioorganic & Medicinal Chemistry, 2015. View at Publisher · View at Google Scholar
  • Ying Wang, Haiyan Hu, and Xiaoman Li, “MBBC: an efficient approach for metagenomic binning based on clustering,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Tianmin Wang, Hiroshi Mori, Chong Zhang, Ken Kurokawa, Xin-Hui Xing, and Takuji Yamada, “DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Raluca Uricaru, Célia Michotey, Hélène Chiapello, and Eric Rivals, “YOC, A new strategy for pairwise alignment of collinear genomes,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, and Pierre Goloubinoff, “Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs,” Cell Stress and Chaperones, 2015. View at Publisher · View at Google Scholar
  • Cécile Vriet, Lars Hennig, and Christophe Laloi, “Stress-induced chromatin changes in plants: of memories, metabolites and crop improvement,” Cellular and Molecular Life Sciences, 2015. View at Publisher · View at Google Scholar
  • Hamid Babamoradi, José Manuel Amigo, Frans van den Berg, Morten Rønn Petersen, Nana Satake, and Gry Boe-Hansen, “Quality assessment of boar semen by multivariate analysis of flow cytometric data,” Chemometrics and Intelligent Laboratory Systems, vol. 142, pp. 219–230, 2015. View at Publisher · View at Google Scholar
  • Vimal K. Shrivastava, Narendra D. Londhe, Rajendra S. Sonawane, and Jasjit S. Suri, “First Review on Psoriasis Severity Risk Stratification: An Engineering Perspective,” Computers in Biology and Medicine, 2015. View at Publisher · View at Google Scholar
  • Serena Di Palma, and Bernd Bodenmiller, “Unraveling cell populations in tumors by single-cell mass cytometry,” Current Opinion In Biotechnology, vol. 31, pp. 122–129, 2015. View at Publisher · View at Google Scholar
  • Dóra Szakonyi, Sofie Van Landeghem, Katja Baerenfaller, Lieven Baeyens, Jonas Blomme, Rubén Casanova-Sáez, Stefanie De Bodt, David Esteve-Bruna, Fabio Fiorani, Nathalie Gonzalez, Jesper Grønlund, Richard G.H. Immink, Sara Jover-Gil, Asuka Kuwabara, Tamara Muñoz-Nortes, Aalt D.J. van Dijk, David Wilson-Sánchez, Vicky Buchanan-Wollaston, Gerco C. Angenent, Yves Van de Peer, Dirk Inzé, José Luis Micol, Wilhelm Gruissem, Sean Walsh, and Pierre Hilson, “The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining,” Current Plant Biology, 2015. View at Publisher · View at Google Scholar
  • Justin W. Walley, and Steven P. Briggs, “Dual use of peptide mass spectra: Protein atlas and genome annotation,” Current Plant Biology, vol. 2, pp. 21–24, 2015. View at Publisher · View at Google Scholar
  • Sofie Van Gassen, Britt Callebaut, Mary J. Van Helden, Bart N. Lambrecht, Piet Demeester, Tom Dhaene, and Yvan Saeys, “FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data,” Cytometry Part A, 2015. View at Publisher · View at Google Scholar
  • Peng Qiu, “Computational prediction of manually gated rare cells in flow cytometry data,” Cytometry Part A, 2015. View at Publisher · View at Google Scholar
  • Joanna Obacz, Martina Takacova, Veronika Brychtova, Petr Dobes, Silvia Pastorekova, Borivoj Vojtesek, and Roman Hrstka, “The role of AGR2 and AGR3 in cancer: Similar but not identical,” European Journal of Cell Biology, 2015. View at Publisher · View at Google Scholar
  • Dongbing Cui, Lujia Zhang, Shuiqin Jiang, Zhiqiang Yao, Bei Gao, Jinping Lin, Y. Adam Yuan, and Dongzhi Wei, “A computational strategy for altering an enzyme in its cofactor preference to NAD(H) and/or NADP(H),” FEBS Journal, 2015. View at Publisher · View at Google Scholar
  • K. Artemenko, J. Mi, and J. Bergquist, “Mass-spectrometry-based characterization of oxidations in proteins,” Free Radical Research, pp. 1–17, 2015. View at Publisher · View at Google Scholar
  • Prachi Pandey, Jitender Singh, V. Mohan Murali Achary, and Mallireddy K. Reddy, “Redox homeostasis via gene families of ascorbate-glutathione pathway,” Frontiers in Environmental Science, vol. 3, 2015. View at Publisher · View at Google Scholar
  • Saliha DurmuÅŸ, Tunahan Çakır, Arzucan Özgür, and Reinhard Guthke, “A review on computational systems biology of pathogen–host interactions,” Frontiers in Microbiology, vol. 6, 2015. View at Publisher · View at Google Scholar
  • Anna Speiser, Stefan Haberland, Mutsumi Watanabe, Markus Wirtz, Karl-Josef Dietz, Kazuki Saito, and Rüdiger Hell, “The significance of cysteine synthesis for acclimation to high light conditions,” Frontiers in Plant Science, vol. 5, 2015. View at Publisher · View at Google Scholar
  • Martin Janda, Vladimír Å aÅ¡ek, Hana ChmelaÅ™ová, Jan Andrejch, Miroslava Nováková, Jana HajÅ¡lová, Lenka Burketová, and Olga Valentová, “Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana,” Frontiers in Plant Science, vol. 6, 2015. View at Publisher · View at Google Scholar
  • Marharyta Petukh, Tugba G. Kucukkal, and Emil Alexov, “On Human Disease-Causing Amino Acid Variants: Statistical Study of Sequence and Structural Patterns,” Human Mutation, 2015. View at Publisher · View at Google Scholar
  • Wu Li, Xiangyu Fan, Quanxin Long, Longxiang Xie, and Jianping Xie, “Mycobacterium tuberculosis Effectors Involved in Host-Pathogen Interaction Revealed by a Multiple Scales Integrative Pipeline,” Infection, Genetics and Evolution, 2015. View at Publisher · View at Google Scholar
  • Filippo Galgani, Paul Compton, and Achim Hoffmann, “Summarization based on bi-directional citation analysis,” Information Processing & Management, vol. 51, no. 1, pp. 1–24, 2015. View at Publisher · View at Google Scholar
  • Daniel Felix Ahelegbey, Monica Billio, and Roberto Casarin, “Bayesian Graphical Models for STructural Vector Autoregressive Processes,” Journal of Applied Econometrics, 2015. View at Publisher · View at Google Scholar
  • Xuben Hou, Jintong Du, Renshuai Liu, Yi Zhou, Minyong Li, Wenfang Xu, and Hao Fang, “Enhancing the Sensitivity of Pharmacophore-Based Virtual Screening by Incorporating Customized ZBG Features: A Case Study Using Histone Deacetylase 8,” Journal of Chemical Information and Modeling, pp. 150316150556004, 2015. View at Publisher · View at Google Scholar
  • Laetitia Bourgeade, Cédric Chauve, and Julien Allali, “Chaining Sequence/Structure Seeds for Computing RNA Similarity,” Journal of Computational Biology, vol. 22, no. 3, pp. 205–217, 2015. View at Publisher · View at Google Scholar
  • Rahman Alizadeh, Imtiyaz Yousuf, Mohd Afzal, Saurabh Srivastav, Saripella Srikrishna, and Farukh Arjmand, “Enantiomeric fluoro–substituted benzothiazole Schiff base–valine Cu(II)/Zn(II) complexes as chemotherapeutic agents: DNA binding profile, cleavage activity, MTT assay and cell imaging studies,” Journal of Photochemistry and Photobiology B: Biology, 2015. View at Publisher · View at Google Scholar
  • Rahman Alizadeh, Imtiyaz Yousuf, Mohd Afzal, Saurabh Srivastav, Saripella Srikrishna, and Farukh Arjmand, “Enantiomeric fluoro-substituted benzothiazole Schiff base-valine Cu(II)/Zn(II) complexes as chemotherapeutic agents: DNA binding profile, cleavage act,” Journal Of Photochemistry And Photobiology B-Biology, vol. 143, pp. 61–73, 2015. View at Publisher · View at Google Scholar
  • Krisztina Bela, Edit Horváth, Ágnes Gallé, László Szabados, Irma Tari, and Jolán Csiszár, “Plant glutathione peroxidases: Emerging role of the antioxidant enzymes in plant development and stress responses,” Journal of Plant Physiology, vol. 176, pp. 192–201, 2015. View at Publisher · View at Google Scholar
  • Chang Gyo Jung, Sun-Goo Hwang, Yong Chan Park, Hyeon Mi Park, Dong Sub Kim, Duck Hwan Park, and Cheol Seong Jang, “Molecular characterization of the cold- and heat-induced Arabidopsis PXL1 gene and its potential role in transduction pathways under temperature fluctuations,” Journal of Plant Physiology, vol. 176, pp. 138–146, 2015. View at Publisher · View at Google Scholar
  • Limin Li, Kiyoko F. Aoki-Kinoshita, Wai-Ki Ching, and Hao Jiang, “On using physico-chemical properties of amino acids in string kernels for protein classification via support vector machines,” Journal of Systems Science and Complexity, 2015. View at Publisher · View at Google Scholar
  • Ki Joon Cho, Bert Schepens, Jong Hyeon Seok, Sella Kim, Kenny Roose, Ji-Hye Lee, Rodrigo Gallardo, Evelien Van Hamme, Joost Schymkowitz, Frederic Rousseau, Walter Fiers, Xavier Saelens, and Kyung Hyun Kim, “Structure of the Extracellular Domain of Matrix Protein 2 of Influenza A Virus in Complex with a Protective Monoclonal Antibody,” Journal Of Virology, vol. 89, no. 7, pp. 3700–3711, 2015. View at Publisher · View at Google Scholar
  • Frédéric Bringaud, Marc Biran, Yoann Millerioux, Marion Wargnies, Stefan Allmann, and Muriel Mazet, “Combining reverse genetics and nuclear magnetic resonance-based metabolomics unravels trypanosome-specific metabolic pathways,” Molecular Microbiology, 2015. View at Publisher · View at Google Scholar
  • Rui Chen, Li-Ping Shen, Dong-Hui Wang, Fu-Gui Wang, Hong-Yun Zeng, Zhi-Shan Chen, Yi-Ben Peng, Ya-Nan Lin, Xing Tang, Ming-Hua Deng, Nan Yao, Jing-Chu Luo, Zhi-Hong Xu, and Shu-Nong Bai, “A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58,” Molecular Plant, 2015. View at Publisher · View at Google Scholar
  • Hongli Ji, Godelieve Gheysen, Chhana Ullah, Ruben Verbeek, Chenjing Shang, David De Vleesschauwer, Monica Höfte, and Tina Kyndt, “The role of thionins in rice defence against root pathogens,” Molecular Plant Pathology, 2015. View at Publisher · View at Google Scholar
  • Lucas Parada, Carlos Herrera, Mauricio Sepúlveda, and Víctor Parada, “Evolution of new algorithms for the binary knapsack problem,” Natural Computing, 2015. View at Publisher · View at Google Scholar
  • G.R. Banik, G. Khandaker, and H. Rashid, “Middle East Respiratory Syndrome Coronavirus “MERS-CoV”: Current Knowledge Gaps,” Paediatric Respiratory Reviews, 2015. View at Publisher · View at Google Scholar
  • Majid Masso, “Modeling functional changes to Escherichia coli thymidylate synthase upon single residue replacements: a structure-based approach,” Peerj, vol. 3, 2015. View at Publisher · View at Google Scholar
  • H. Yu, M. Soler, H. San Clemente, I. Mila, J. A. P. Paiva, A. A. Myburg, M. Bouzayen, J. Grima-Pettenati, and H. Cassan-Wang, “Comprehensive Genome-Wide Analysis of the Aux/IAA Gene Family in Eucalyptus: Evidence for the Role of EgrIAA4 in Wood Formation,” Plant and Cell Physiology, 2015. View at Publisher · View at Google Scholar
  • J. Novak, M.  erny, J. Pavl , J. Zemankova, J. Skalak, L. Pla kova, and B. Brzobohaty, “Roles of Proteome Dynamics and Cytokinin Signaling in Root to Hypocotyl Ratio Changes Induced by Shading Roots of Arabidopsis Seedlings,” Plant and Cell Physiology, 2015. View at Publisher · View at Google Scholar
  • Jiao Wang, Shanshan Chu, Ying Zhu, Hao Cheng, and Deyue Yu, “Positive selection drives neofunctionalization of the UbiA prenyltransferase gene family,” Plant Molecular Biology, vol. 87, no. 4-5, pp. 383–394, 2015. View at Publisher · View at Google Scholar
  • Nicolas Navrot, Nicklas Skjoldager, Jakob Bunkenborg, Birte Svensson, and Per Hägglund, “A redox-dependent dimerization switch regulates activity and tolerance for reactive oxygen species of barley seed glutathione peroxidase,” Plant Physiology and Biochemistry, 2015. View at Publisher · View at Google Scholar
  • Liem T. Bui, Beatrice Giuntoli, Monika Kosmacz, Sandro Parlanti, and Francesco Licausi, “Constitutively expressed ERF-VII transcription factors redundantly activate the core anaerobic response in Arabidopsis thaliana,” Plant Science, vol. 236, pp. 37–43, 2015. View at Publisher · View at Google Scholar
  • Javier Cabrera, Carmen Fenoll, and Carolina Escobar, “ Genes co-regulated with LBD16 in nematode feeding sites inferred from in silico analysis show similarities to regulatory circuits mediated by the auxin/cytokinin balance in Arabidopsis ,” Plant Signaling & Behavior, pp. 00–00, 2015. View at Publisher · View at Google Scholar
  • Tarikul Huda Mazumder, and Supriyo Chakraborty, “Gaining Insights into the Codon Usage Patterns of TP53 Gene across Eight Mammalian Species,” Plos One, vol. 10, no. 3, 2015. View at Publisher · View at Google Scholar
  • Niels H. H. Heegaard, Ole Østergaard, Justyna M. C. Bahl, Martin Overgaard, Hans C. Beck, Lars Melholt Rasmussen, and Martin R. Larsen, “Important options available - from start to finish - for translating proteomics results to clinical chemistry,” PROTEOMICS - Clinical Applications, 2015. View at Publisher · View at Google Scholar
  • Ki-Jo Kim, Saseong Lee, and Wan-Uk Kim, “Applications of systems approaches in the study of rheumatic diseases,” The Korean Journal of Internal Medicine, vol. 30, no. 2, pp. 148, 2015. View at Publisher · View at Google Scholar
  • Satoshi Kidokoro, Keitaro Watanabe, Teppei Ohori, Takashi Moriwaki, Kyonoshin Maruyama, Junya Mizoi, Nang Myint Phyu Sin Htwe, Yasunari Fujita, Sachiko Sekita, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki, “Soybean DREB1/CBF-type transcription factors function in heat and drought as well as cold stress-responsive gene expression,” The Plant Journal, vol. 81, no. 3, pp. 505–518, 2015. View at Publisher · View at Google Scholar
  • Csaba Papdi, Imma Pérez-Salamó, Mary Prathiba Joseph, Beatrice Giuntoli, László Bögre, Csaba Koncz, and László Szabados, “ The low oxygen, oxidative and osmotic stress responses synergistically act through the ethylene response factor VII genes RAP2.12 , RAP2.2 and RAP2.3 ,” The Plant Journal, 2015. View at Publisher · View at Google Scholar
  • Raúl Manzano-Román, Verónica Díaz-Martín, Ana Oleaga, and Ricardo Pérez-Sánchez, “Identification of protective linear B-cell epitopes on the subolesin/akirin orthologues of Ornithodoros spp. soft ticks,” Vaccine, 2015. View at Publisher · View at Google Scholar
  • Lorentz Jäntschi, and Sorana D. Bolboacă, “Distribution on Contingency of Alignment of Two Literal Sequences Under Constrains,” Acta Biotheoretica, 2014. View at Publisher · View at Google Scholar
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  • Hui-Chuan Huan, Hsiu-Ju Chang, Kuan-Chia Lin, Hsiao-Yean Chiu, Jui-Hung Chung, and Hong-Chieh Tsai, “A Closer Examination of the Interaction Among Risk Factors for Low Back Pain,” American Journal of Health Promotion, vol. 28, no. 6, pp. 372–379, 2014. View at Publisher · View at Google Scholar
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  • Giada Marino, Putter F. Huesgen, Ulrich Eckhard, Christopher M. Overall, Wolfgang P. Schroeder, and Christiane Funk, “Family-wide characterization of matrix metalloproteinases from Arabidopsis thaliana reveals their distinct proteolytic activity and cleavage site specificity,” Biochemical Journal, vol. 457, pp. 335–346, 2014. View at Publisher · View at Google Scholar
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