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Citations to this Journal [683 citations: 1–100 of 663 articles]

Articles published in Advances in Bioinformatics have been cited 683 times. The following is a list of the 663 articles that have cited the articles published in Advances in Bioinformatics.

  • Swakkhar Shatabda, M. A. Hakim Newton, Mahmood A. Rashid, Duc Nghia Pham, and Abdul Sattar, “How Good Are Simplified Models for Protein Structure Prediction?,” Advances in Bioinformatics, vol. 2014, pp. 1–9, 2014. View at Publisher · View at Google Scholar
  • Hui-Chuan Huan, Hsiu-Ju Chang, Kuan-Chia Lin, Hsiao-Yean Chiu, Jui-Hung Chung, and Hong-Chieh Tsai, “A Closer Examination of the Interaction Among Risk Factors for Low Back Pain,” American Journal of Health Promotion, vol. 28, no. 6, pp. 372–379, 2014. View at Publisher · View at Google Scholar
  • Janneke Balk, and Theresia A. Schaedler, “Iron Cofactor Assembly in Plants,” Annual Review of Plant Biology, vol. 65, no. 1, pp. 125–153, 2014. View at Publisher · View at Google Scholar
  • Ramesha Thimmappa, Katrin Geisler, Thomas Louveau, Paul O'Maille, and Anne Osbourn, “Triterpene Biosynthesis in Plants,” Annual Review of Plant Biology, vol. 65, no. 1, pp. 225–257, 2014. View at Publisher · View at Google Scholar
  • Lauri Vaahtera, Mikael Brosché, Michael Wrzaczek, and Jaakko Kangasjärvi, “Specificity in ROS Signaling and Transcript Signatures,” Antioxidants & Redox Signaling, pp. 140206081908000, 2014. View at Publisher · View at Google Scholar
  • Francesca Turroni, Valentina Taverniti, Patricia Ruas-Madiedo, Sabrina Duranti, Simone Guglielmetti, Gabriele Andrea Lugli, Laura Gioiosa, Paola Palanza, Abelardo Margolles, and Douwe van Sinderen, “Bifidobacterium bifidum PRL2010 Modulates the Host Innate Immune Response,” Applied and Environmental Microbiology, vol. 80, no. 2, pp. 730–740, 2014. View at Publisher · View at Google Scholar
  • Fc García, Á López-Urrutia, and Xag Morán, “Automated clustering of heterotrophic bacterioplankton in flow cytometry data,” Aquatic Microbial Ecology, vol. 72, no. 2, pp. 175–185, 2014. View at Publisher · View at Google Scholar
  • Giada Marino, Putter F. Huesgen, Ulrich Eckhard, Christopher M. Overall, and Wolfgang P. Schroeder, “Family-wide characterization of matrix metalloproteinases from Arabidopsis thaliana reveals their distinct proteolytic activity and cleavage site spec ificity,” Biochemical Journal, vol. 457, pp. 335–346, 2014. View at Publisher · View at Google Scholar
  • Q. Fu, A. C. Fierro, P. Meysman, A. Sanchez-Rodriguez, K. Van depoele, K. Marchal, and K. Engelen, “MAGIC: access portal to a cross-platform gene expression compendium for Maize,” Bioinformatics, 2014. View at Publisher · View at Google Scholar
  • Jiuwen Cao, and Lianglin Xiong, “Protein Sequence Classification with Improved Extreme Learning Machine Algorithms,” BioMed Research International, vol. 2014, pp. 1–12, 2014. View at Publisher · View at Google Scholar
  • Chao Han, Zujiang Yu, Zhenfeng Duan, and Quancheng Kan, “Role of MicroRNA-1 in Human Cancer and Its Therapeutic Potentials,” BioMed Research International, vol. 2014, pp. 1–11, 2014. View at Publisher · View at Google Scholar
  • Salvador Eugenio C. Caoili, “Benchmarking B-Cell Epitope Prediction with Quantitative Dose-Response Data on Antipeptide Antibodies: Towards Novel Pharmaceutical Product Development,” BioMed Research International, vol. 2014, pp. 1–13, 2014. View at Publisher · View at Google Scholar
  • Brian Maher, Andreas Albrecht, Martin Loomes, Xin-She Yang, and Kathleen Steinhöfel, “A Firefly-Inspired Method for Protein Structure Prediction in Lattice Models,” Biomolecules, vol. 4, no. 1, pp. 56–75, 2014. View at Publisher · View at Google Scholar
  • Jean F. Challacombe, “Mining locus tags in PubMed Central to improve microbial gene annotation,” Bmc Bioinformatics, vol. 15, 2014. View at Publisher · View at Google Scholar
  • William Baumgartner, Benjamin Garcia, Christophe Roeder, Michael Bada, K. Bretonnel Cohen, Lawrence E. Hunter, and Karin Verspoor, “Large-scale biomedical concept recognition: an evaluation of current automa tic annotators and their parameters,” Bmc Bioinformatics, vol. 15, 2014. View at Publisher · View at Google Scholar
  • Han-Qin Zheng, Yi-Fan Chiang-Hsieh, Chia-Hung Chien, Bo-Kai Justin Hsu, Tsung-Lin Liu, and Wen-Chi Chang, “AlgaePath: comprehensive analysis of metabolic pathways using transcript ab undance data from next-generation sequencing in green algae,” Bmc Genomics, vol. 15, 2014. View at Publisher · View at Google Scholar
  • Anuradha Singh, Shrikant Mantri, Monica Sharma, Ashok Chaudhury, and Rakesh Tuli, “Genome-wide transcriptome study in wheat identified candidate genes related to processing quality, majority of them showing interaction (quality x dev elopment) and having temporal and spatial distributions,” Bmc Genomics, vol. 15, 2014. View at Publisher · View at Google Scholar
  • Melanie Wiesner, and Monika Schreiner, “Functional identification of genes responsible for the biosynthesis of 1-me thoxy-indol-3-ylmethyl-glucosinolate in Brassica rapa ssp chinensis,” Bmc Plant Biology, vol. 14, 2014. View at Publisher · View at Google Scholar
  • Dale Zhang, Jinfeng Qi, Jipei Yue, Jinling Huang, Ting Sun, Suoping Li, Jian-Fan Wen, Christian Hettenhausen, Jinsong Wu, Lei Wang, Huifu Zhuang, and Guiling Sun, “Root parasitic plant Orobanche aegyptiaca and shoot parasitic plant Cuscuta australis obtained Brassicaceae-specific strictosidine synthase-like genes by horizontal gene transfer,” Bmc Plant Biology, vol. 14, 2014. View at Publisher · View at Google Scholar
  • Ricardo A. Chavez Montes, Gerardo Coello, Karla L. Gonzalez-Aguilera, Nayelli Marsch-Martinez, and Stefan de Folter, “ARACNe-based inference, using curated microarray data, of Arabidopsis thali ana root transcriptional regulatory networks,” Bmc Plant Biology, vol. 14, 2014. View at Publisher · View at Google Scholar
  • Oumarou Abdou-Arbi, Sophie Lemosquet, Jaap Van Milgen, and Anne Siegel, “Exploring metabolism flexibility in complex organisms through quantitative study of precursor sets for system outputs,” Bmc Systems Biology, vol. 8, 2014. View at Publisher · View at Google Scholar
  • Chan Ju Lim, Hyun A. Jang, So Young Yi, Sang-Keun Oh, Ha Yeon Lee, Hyun A. Kim, Youn-Il Park, and Suk-Yoon Kwon, “SlPMEI, a pollen-specific gene in tomato,” Canadian Journal of Plant Science, vol. 94, no. 1, pp. 73–83, 2014. View at Publisher · View at Google Scholar
  • Teresa Nunez Villavicencio-Diaz, Arielis Rodriguez-Ulloa, and Osmany Guirola-Cruz, “Bioinformatics Tools for the Functional Interpretation of Quantitative Prot eomics Results,” Current Topics in Medicinal Chemistry, vol. 14, no. 3, pp. 435–449, 2014. View at Publisher · View at Google Scholar
  • Wenxin Jiang, Kevin Krouse, Chungwen Wei, Ignacio Sanz, Deborah Phippard, Adam Asare, Stephen C. De Rosa, Steve Self, and Raphael Gottardo, “High-Throughput Flow Cytometry Data Normalization for Clinical Trials,” Cytometry Part A, vol. 85, no. 3, pp. 277–286, 2014. View at Publisher · View at Google Scholar
  • Tim R. Mosmann, Iftekhar Naim, Jonathan Rebhahn, Suprakash Datta, James S. Cavenaugh, Jason M. Weaver, and Gaurav Sharma, “SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, Part 2: Biological evaluation,” Cytometry Part A, 2014. View at Publisher · View at Google Scholar
  • Gaurav Sharma, Iftekhar Naim, Suprakash Datta, Jonathan Rebhahn, James S. Cavenaugh, and Tim R. Mosmann, “SWIFT-scalable clustering for automated identification of rare cell populations in large, high-dimensional flow cytometry datasets, Part 1: Algorithm design,” Cytometry Part A, 2014. View at Publisher · View at Google Scholar
  • Bhargav Vyas, and Biswarup Das, “Investigation for Improved Artificial Intelligence Techniques for Thyristor -controlled Series-compensated Transmission Line Fault Classification with Discrete Wavelet Packet Entropy Measures,” Electric Power Components and Systems, vol. 42, no. 6, pp. 554–566, 2014. View at Publisher · View at Google Scholar
  • Janda Martin, and Ruelland Eric, “Magical Mystery Tour: Salicylic acid signalling,” Environmental and Experimental Botany, 2014. View at Publisher · View at Google Scholar
  • Shivnarayan Patidar, and Ram Bilas Pachori, “Classification of cardiac sound signals using constrained tunable-Q wavelet transform,” Expert Systems with Applications, 2014. View at Publisher · View at Google Scholar
  • Zofia Felicja Bielecka, Anna MaÅ‚gorzata Czarnecka, and Cezary Szczylik, “Genomic Analysis as the First Step toward Personalized Treatment in Renal Cell Carcinoma,” Frontiers in Oncology, vol. 4, 2014. View at Publisher · View at Google Scholar
  • Madlen Nietzsche, and Ingrid Schiessl, “The complex becomes more complex: protein-protein interactions of SnR K1 with DUF581 family proteins provide a framework for cell- a nd stimulus type-specific SnRK1 signaling in plants ,” Frontiers in Plant Science, vol. 5, 2014. View at Publisher · View at Google Scholar
  • Stamatis Rigas, Gerasimos Daras, Dikran Tsitsekian, Anastasios Alatzas, and Polydefkis Hatzopoulos, “Evolution and significance of the Lon gene family in Arabidopsis organelle biogenesis and energy metabolism,” Frontiers in Plant Science, vol. 5, 2014. View at Publisher · View at Google Scholar
  • Thomas J. Sharpton, “An introduction to the analysis of shotgun metagenomic data,” Frontiers in Plant Science, vol. 5, 2014. View at Publisher · View at Google Scholar
  • Woong Bom Kim, So Young Yi, Sang-Keun Oh, Chan Ju Lim, Hyun A. Kim, Hyun A. Jang, Ha Yeon Lee, Youn-Il Park, and Suk-Yoon Kwon, “Identification of a pollen-specific gene, SlCRK1 (RFK2) in tomato,” Genes & Genomics, 2014. View at Publisher · View at Google Scholar
  • Martyn Amos, “Population-based microbial computing: a third wave of synthetic biology?,” International Journal of General Systems, pp. 1–13, 2014. View at Publisher · View at Google Scholar
  • Kristin Kassler, “Molecular mechanism of HIV-1 gp120 mutations that reduce CD4 binding affini ty,” Journal of Biomolecular Structure & Dynamics, vol. 32, no. 1, pp. 52–64, 2014. View at Publisher · View at Google Scholar
  • Ellen H. Colebrook, Stephen G. Thomas, and Andrew L. Phillips, “The role of gibberellin signalling in plant responses to abiotic stress,” Journal of Experimental Biology, vol. 217, no. 1, pp. 67–75, 2014. View at Publisher · View at Google Scholar
  • Adam J. Richards, Janet Staats, Jennifer Enzor, Katherine McKinnon, Jacob Frelinger, Thomas N. Denny, Kent J. Weinhold, and Cliburn Chan, “Setting objective thresholds for rare event detection in flow cytometry,” Journal of Immunological Methods, 2014. View at Publisher · View at Google Scholar
  • Miguel Angel Rodrigo Merlos, Ondrej Zitka, Sona Krizkova, Amitava Moulick, Vojtech Adam, and Rene Kizek, “MALDI-TOF MS as evolving cancer diagnostic tool: A review,” Journal of Pharmaceutical and Biomedical Analysis, 2014. View at Publisher · View at Google Scholar
  • Qingsong Gao, Hui Zang, Yun Gao, Zefeng Yang, Yong Zhou, Yuming Luo, Yuan Yuan, Yifan Wang, Liming Yang, Xing Xu, Jun Wang, Chenwu Xu, and Guohua Liang, “Comprehensive molecular evolution and gene expression analyses of the ABC1 atypical kinase family in rice and Arabidopsis,” Journal of Plant Biochemistry and Biotechnology, 2014. View at Publisher · View at Google Scholar
  • B. T. Sy, H. M. Nguyen, N. L. Toan, L. H. Song, H. V. Tong, C. Wolboldt, V. Q. Binh, P. G. Kremsner, T. P. Velavan, and C.-T. Bock, “Identification of a natural intergenotypic recombinant hepatitis delta virus genotype 1 and 2 in Vietnamese HBsAg-positive patients,” Journal of Viral Hepatitis, 2014. View at Publisher · View at Google Scholar
  • Priya Raja, Jamie N. Jackel, Sizhun Li, and Isaac M. Heard, “Arabidopsis Double-Stranded RNA Binding Protein DRB3 Participates in Methyl ation-Mediated Defense against Geminiviruses,” Journal of Virology, vol. 88, no. 5, pp. 2611–2622, 2014. View at Publisher · View at Google Scholar
  • Welkin H. Pope, Kirk R. Anders, Madison Baird, Charles A. Bowman, Michelle M. Boyle, Gregory W. Broussard, Tiffany Chow, Kari L. Clase, Shannon Cooper, Kathleen A. Cornely, Randall J. DeJong, Veronique A. Delesalle, Lisa Deng, David Dunbar, Nicholas P. Edgington, Christina M. Ferreira, Kathleen Weston Hafer, Grant A. Hartzog, J. Robert Hatherill, Lee E. Hughes, Khristina Ipapo, Greg P. Krukonis, Christopher G. Meier, Denise L. Monti, Matthew R. Olm, Shallee T. Page, Craig L. Peebles, Claire A. Rinehart, Michael R. Rubin, Daniel A. Russell, Erin R. Sanders, Morgan Schoer, Christopher D. Shaffer, James Wherley, Edwin Vazquez, Han Yuan, Daiyuan Zhang, Steven G. Cresawn, Deborah Jacobs-Sera, and Roger W. Hendrix, “Cluster M Mycobacteriophages Bongo, PegLeg, and Rey with Unusually Large Re pertoires of tRNA Isotypes,” Journal of Virology, vol. 88, no. 5, pp. 2461–2480, 2014. View at Publisher · View at Google Scholar
  • Joanna Przybyl, Katarzyna Kozak, Hanna Kosela, Slawomir Falkowski, Tomasz Switaj, Iwona Lugowska, Anna Szumera-Cieckiewicz, Konrad Ptaszynski, Beata Grygalewicz, Magdalena Chechlinska, Barbara Pienkowska-Grela, Maria Debiec-Rychter, Janusz A. Siedlecki, and Piotr Rutkowski, “Gene expression profiling of peripheral blood cells: new insights into Ewing sarcoma biology and clinical applications,” Medical Oncology, vol. 31, no. 8, 2014. View at Publisher · View at Google Scholar
  • Chien-Ming Chen, Yu-Lun Lu, Chi-Pong Sio, Guan-Chung Wu, Wen-Shyong Tzou, and Tun-Wen Pai, “Gene Ontology Based Housekeeping Gene Selection for RNA-seq Normalization,” Methods, 2014. View at Publisher · View at Google Scholar
  • Nguyen Binh Anh Thu, Xuan Lan Thi Hoang, Hieu Doan, Thanh-Hao Nguyen, Dao Bui, Nguyen Phuong Thao, and Lam-Son Phan Tran, “Differential expression analysis of a subset of GmNAC genes in shoots of two contrasting drought-responsive soybean cultivars DT51 and MTD720 under normal and drought conditions,” Molecular Biology Reports, 2014. View at Publisher · View at Google Scholar
  • Daeseok Choi, Jaemyung Choi, Byeongsoo Kang, Seungchul Lee, Young-hyun Cho, and Ildoo Hwang, “iNID: An Analytical Framework for Identifying Network Models for Interplays among Developmental Signaling in Arabidopsis,” Molecular Plant, vol. 7, no. 5, pp. 792–813, 2014. View at Publisher · View at Google Scholar
  • R. Fasano, N. Gonzalez, A. Tosco, F. Dal Piaz, T. Docimo, R. Serrano, S. Grillo, A. Leone, and D. Inze, “Role of Arabidopsis UV RESISTANCE LOCUS 8 in Plant Growth Reduction under Osmotic Stress and Low Levels of UV-B,” Molecular Plant, 2014. View at Publisher · View at Google Scholar
  • N. Sewelam, N. Jaspert, K. Van Der Kelen, V. B. Tognetti, J. Schmitz, H. Frerigmann, E. Stahl, J. Zeier, F. Van Breusegem, and V. G. Maurino, “Spatial H2O2 Signaling Specificity: H2O2 from Chloroplasts and Peroxisomes Modulates the Plant Transcriptome Differentially,” Molecular Plant, 2014. View at Publisher · View at Google Scholar
  • Alessandra Lucioli, Alessandra Berardi, Francesca Gatti, Raffaela Tavazza, and Daniele Pizzichini, “Tomato yellow leaf curl Sardinia virus-resistant tomato plants expressing t he multifunctional N-terminal domain of the replication-associated protein show transcriptional changes resembling stress-related responses,” Molecular Plant Pathology, vol. 15, no. 1, pp. 31–43, 2014. View at Publisher · View at Google Scholar
  • Javier Cabrera, Regla Bustos, Bruno Favery, Carmen Fenoll, and Carolina Escobar, “ NEMATIC: a simple and versatile tool for the in silico analysis of plant-nematode interactions ,” Molecular Plant Pathology, 2014. View at Publisher · View at Google Scholar
  • Jonathan Rodriguez-Lopez, Cynthia Martinez-Centeno, Annamalai Padmanaban, Gabriel Guillen, Juan Elias Olivares, Giovanni Stefano, Fernando Lledias, Fernando Ramos, Said A. Ghabrial, Federica Brandizzi, Mario Rocha-Sosa, and Federico Sanchez, “Nodulin 22, a Novel Small Heat-Shock Protein of the Endoplasmic Reticulum, Is Linked to the Unfolded Protein Response in Common Bean,” Molecular Plant-Microbe Interactions, vol. 27, no. 1, pp. 18–29, 2014. View at Publisher · View at Google Scholar
  • Andrea G. Citrolo, and Giancarlo Mauri, “A local landscape mapping method for protein structure prediction in the HP model,” Natural Computing, 2014. View at Publisher · View at Google Scholar
  • Daan A. Weits, Beatrice Giuntoli, Monika Kosmacz, Sandro Parlanti, Hans-Michael Hubberten, Heike Riegler, Rainer Hoefgen, Pierdomenico Perata, Joost T. van Dongen, and Francesco Licausi, “Plant cysteine oxidases control the oxygen-dependent branch of the N-end-rule pathway,” Nature Communications, vol. 5, 2014. View at Publisher · View at Google Scholar
  • Daniel J. Gibbs, Ute Voß, Susan A. Harding, Jessica Fannon, Laura A. Moody, Erika Yamada, Kamal Swarup, Candida Nibau, George W. Bassel, Anushree Choudhary, Julien Lavenus, Susan J. Bradshaw, Dov J. Stekel, Malcolm J. Bennett, and Juliet C. Coates, “ At MYB93 is a novel negative regulator of lateral root development in Arabidopsis ,” New Phytologist, 2014. View at Publisher · View at Google Scholar
  • Mátyás Gorjánácz, “Nuclear assembly as a target for anti-cancer therapies,” Nucleus, vol. 5, no. 1, 2014. View at Publisher · View at Google Scholar
  • Lisbeth N. Fink, Sheila R. Costford, Yun S. Lee, Thomas E. Jensen, Philip J. Bilan, Andreas Oberbach, Matthias Blueher, Jerrold M. Olefsky, and Anette Sams, “Pro-Inflammatory Macrophages Increase in Skeletal Muscle of High Fat-Fed Mi ce and Correlate with Metabolic Risk Markers in Humans,” Obesity, vol. 22, no. 3, pp. 747–757, 2014. View at Publisher · View at Google Scholar
  • Daniele Santoni, Aleksandra Swiercz, Agnieszka Zmienko, Marta Kasprzak, Marek Blazewicz, and Paola Bertolazzi, “An Integrated Approach (CLuster Analysis Integration Method) to Combine Exp ression Data and Protein-Protein Interaction Networks in Agrigenomics: Appl ication on Arabidopsis thaliana,” Omics-A Journal of Integrative Biology, vol. 18, no. 2, pp. 155–165, 2014. View at Publisher · View at Google Scholar
  • Y-X Fang, “Roles of microRNAs during prostatic tumorigenesis and tumor progression,” Oncogene, vol. 33, no. 2, pp. 135–147, 2014. View at Publisher · View at Google Scholar
  • Mikko Tikkanen, Peter J. Gollan, Nageswara Rao Mekala, and Janne Isojarvi, “Light-harvesting mutants show differential gene expression upon shift to hi gh light as a consequence of photosynthetic redox and reactive oxygen speci es metabolism,” Philosophical Transactions of The Royal Society B-Biological Sciences, vol. 369, no. 1640, 2014. View at Publisher · View at Google Scholar
  • Jose M. G. Vilar, “Entropy of Leukemia on Multidimensional Morphological and Molecular Landscapes,” Physical Review X, vol. 4, no. 2, 2014. View at Publisher · View at Google Scholar
  • Miriam Onrubia, Jacob Pollier, Robin Vanden Bossche, Marc Goethals, Kris Gevaert, Elisabet Moyano, Heriberto Vidal-Limon, Rosa M. Cusidó, Javier Palazón, and Alain Goossens, “Taximin, a conserved plant-specific peptide is involved in the modulation of plant-specialized metabolism,” Plant Biotechnology Journal, 2014. View at Publisher · View at Google Scholar
  • Dalong Yi, Claire Lessa Alvim Kamei, Toon Cools, Sandy Vanderauwera, Naoki Takahashi, Yoko Okushima, Thomas Eekhout, Kaoru Okamoto Yoshiyama, John Larkin, Hilde Van den Daele, Phillip Conklin, Anne Britt, and Masaaki Umeda, “The Arabidopsis SIAMESE-RELATED Cyclin-Dependent Kinase Inhibitors SMR5 and SMR7 Regulate the DNA Damage Checkpoint in Response to Reactive Oxygen Spe cies,” Plant Cell, vol. 26, no. 1, pp. 296–309, 2014. View at Publisher · View at Google Scholar
  • Florence Paynel, Christelle Leroux, Ogier Surcouf, Annick Schaumann, Jérôme Pelloux, Azeddine Driouich, Jean Claude Mollet, Patrice Lerouge, Arnaud Lehner, and Alain Mareck, “Kiwi fruit PMEI inhibits PME activity, modulates root elongation and induces pollen tube burst in Arabidopsis thaliana,” Plant Growth Regulation, 2014. View at Publisher · View at Google Scholar
  • Vladimir Zhurov, Marie Navarro, Kristie A. Bruinsma, Vicent Arbona, M. Estrella Santamaria, Marc Cazaux, Nicky Wybouw, Edward J. Osborne, Cherise Ens, Cristina Rioja, Vanessa Vermeirssen, Ignacio Rubio-Somoza, Priti Krishna, Isabel Diaz, Markus Schmid, Aurelio Gomez-Cadenas, Yves Van de Peer, Miodrag Grbic, Richard M. Clark, and Thomas Van Leeuwen, “Reciprocal Responses in the Interaction between Arabidopsis and the Cell-Co ntent-Feeding Chelicerate Herbivore Spider Mite,” Plant Physiology, vol. 164, no. 1, pp. 384–399, 2014. View at Publisher · View at Google Scholar
  • Kaoru Urano, Kyouko Yoshiwara, Yoshihiko Morishita, Nozomu Sakurai, Hideyuki Suzuki, Mikiko Kojima, Hitoshi Sakakibara, Daisuke Shibata, Kazuki Saito, Kazuo Shinozaki, and Kazuko Yamaguchi-Shinozaki, “Integrated Analysis of the Effects of Cold and Dehydration on Rice Metaboli tes, Phytohormones, and Gene Transcripts,” Plant Physiology, vol. 164, no. 4, pp. 1759–1771, 2014. View at Publisher · View at Google Scholar
  • Amna Mhamdi, and Christine H. Foyer, “The Roles of Reactive Oxygen Metabolism in Drought: Not So Cut and Dried,” Plant Physiology, vol. 164, no. 4, pp. 1636–1648, 2014. View at Publisher · View at Google Scholar
  • Seraina Beeler, Hung-Chi Liu, Martha Stadler, Tina Schreier, Simona Eicke, Wei-Ling Lue, Elisabeth Truernit, Samuel C. Zeeman, and Jychian Chen, “Plastidial NAD-Dependent Malate Dehydrogenase Is Critical for Embryo Develo pment and Heterotrophic Metabolism in Arabidopsis,” Plant Physiology, vol. 164, no. 3, pp. 1175–1190, 2014. View at Publisher · View at Google Scholar
  • Avishai Mor, Eugene Koh, Lev Weiner, Shilo Rosenwasser, and Hadas Sibony-Benyamini, “Singlet Oxygen Signatures Are Detected Independent of Light or Chloroplasts in Response to Multiple Stresses,” Plant Physiology, vol. 165, no. 1, pp. 249–261, 2014. View at Publisher · View at Google Scholar
  • Lena Kruessel, Johannes Junemann, Markus Wirtz, Hannah Birke, Jeremy D. Thornton, Luke W. Browning, Gernot Poschet, Ruediger Hell, Janneke Balk, and Hans-Peter Braun, “The Mitochondrial Sulfur Dioxygenase ETHYLMALONIC ENCEPHALOPATHY PROTEIN1 Is Required for Amino Acid Catabolism during Carbohydrate Starvation and Embryo Development in Arabidopsis,” Plant Physiology, vol. 165, no. 1, pp. 92–104, 2014. View at Publisher · View at Google Scholar
  • Jianfeng Zhang, Anne C. Rea, Tingdong Fu, Chaozhi Ma, and June B. Nasrallah, “Exploring the role of a stigma-expressed plant U-box gene in the pollination responses of transgenic self-incompatible Arabidopsis thaliana,” Plant Reproduction, 2014. View at Publisher · View at Google Scholar
  • Raghavendra P. Savada, and Peta C. Bonham-Smith, “Differential transcript accumulation and subcellular localization of Arabidopsis ribosomal proteins,” Plant Science, 2014. View at Publisher · View at Google Scholar
  • Eduardo González-Grandío, and Pilar Cubas, “Identification of gene functions associated to active and dormant buds in Arabidopsis,” Plant Signaling & Behavior, vol. 9, no. 1, pp. e27994, 2014. View at Publisher · View at Google Scholar
  • C. Belin, T. Bashandy, J. Cela, V. Delorme-Hinoux, C. Riondet, and J. P. Reichheld, “ A comprehensive study of thiol reduction gene expression under stress conditions in A rabidopsis thaliana ,” Plant, Cell & Environment, 2014. View at Publisher · View at Google Scholar
  • Antonio F. Tiburcio, Teresa Altabella, Marta Bitrián, and Rubén Alcázar, “The roles of polyamines during the lifespan of plants: from development to stress,” Planta, 2014. View at Publisher · View at Google Scholar
  • Ayan Sadhukhan, Yasufumi Kobayashi, Yuriko Kobayashi, Mutsutomo Tokizawa, Yoshiharu Y. Yamamoto, Satoshi Iuchi, Hiroyuki Koyama, Sanjib Kumar Panda, and Lingaraj Sahoo, “VuDREB2A, a novel DREB2-type transcription factor in the drought-tolerant legume cowpea, mediates DRE-dependent expression of stress-responsive genes and confers enhanced drought resistance in transgenic Arabidopsis,” Planta, 2014. View at Publisher · View at Google Scholar
  • Radka Reifova, Sona Gregorova, Petr Simecek, Vaclav Gergelits, Martin Mistrik, Iva Martincova, Jaroslav Pialek, and Jiri Forejt, “X Chromosome Control of Meiotic Chromosome Synapsis in Mouse Inter-Subspeci fic Hybrids,” Plos Genetics, vol. 10, no. 2, 2014. View at Publisher · View at Google Scholar
  • Tiina Blomster, Jarkko Salojarvi, Fuqiang Cui, Nina Sipari, Johanna Leppala, Airi Lamminmaki, Gloria Tomai, Shaman Narayanasamy, Ramesha A. Reddy, Markku Keinanen, Kirk Overmyer, and Jaakko Kangasjarvi, “Transcriptomics and Functional Genomics of ROS-Induced Cell Death Regulatio n by RADICAL-INDUCED CELL DEATH1,” Plos Genetics, vol. 10, no. 2, 2014. View at Publisher · View at Google Scholar
  • Amparo Cuellar Perez, Astrid Nagels Durand, Robin Vanden Bossche, Rebecca De Clercq, Geert Persiau, Saskia C. M. Van Wees, Corne M. J. Pieterse, Kris Gevaert, Geert De Jaeger, and Laurens Pauwels, “The Non-JAZ TIFY Protein TIFY8 from Arabidopsis thaliana Is a Transcription al Repressor,” Plos One, vol. 9, no. 1, 2014. View at Publisher · View at Google Scholar
  • Christian Diot, and Olivier Dameron, “Semantic Particularity Measure for Functional Characterization of Gene Sets Using Gene Ontology,” Plos One, vol. 9, no. 1, 2014. View at Publisher · View at Google Scholar
  • Cynthia Sims Parr, “Knowledge Extraction and Semantic Annotation of Text from the Encyclopedia of Life,” Plos One, vol. 9, no. 3, 2014. View at Publisher · View at Google Scholar
  • Michele Filosi, Roberto Visintainer, Samantha Riccadonna, and Cesare Furlanello, “Stability Indicators in Network Reconstruction,” Plos One, vol. 9, no. 2, 2014. View at Publisher · View at Google Scholar
  • Jorge Andrade, and Elizabeth M. McNally, “The CO-Regulation Database (CORD): A Tool to Identify Coordinately Expresse d Genes,” Plos One, vol. 9, no. 3, 2014. View at Publisher · View at Google Scholar
  • Azeem Mehmood Butt, and Izza Nasrullah, “Genome-Wide Analysis of Codon Usage and Influencing Factors in Chikungunya Viruses,” Plos One, vol. 9, no. 3, 2014. View at Publisher · View at Google Scholar
  • Simon Foucart, and Gail Rosen, “WGSQuikr: Fast Whole-Genome Shotgun Metagenomic Classification,” Plos One, vol. 9, no. 3, 2014. View at Publisher · View at Google Scholar
  • Tulin Ersahin, Levent Carkacioglu, Tolga Can, Ozlen Konu, and Volkan Atalay, “Identification of Novel Reference Genes Based on MeSH Categories,” Plos One, vol. 9, no. 3, 2014. View at Publisher · View at Google Scholar
  • Adeel Malik, and Juyong Lee, “Community-Based Network Study of Protein-Carbohydrate Interactions in Plant Lectins Using Glycan Array Data,” Plos One, vol. 9, no. 4, 2014. View at Publisher · View at Google Scholar
  • Jose M. Franco-Zorrilla, Irene Lopez-Vidriero, Jose L. Carrasco, Marta Godoy, and Pablo Vera, “DNA-binding specificities of plant transcription factors and their potentia l to define target genes,” Proceedings of The National Academy of Sciences of The United States of Ame, vol. 111, no. 6, pp. 2367–2372, 2014. View at Publisher · View at Google Scholar
  • Michelle R. Newman, Benjamin J. Blyth, Eva Bezak, Mark D. Lawrence, Katherine L. Morel, and Rebecca J. Ormsby, “The Methylation of DNA Repeat Elements is Sex-Dependent and Temporally Diff erent in Response to X Radiation in Radiosensitive and Radioresistant Mouse Strains,” Radiation Research, vol. 181, no. 1, pp. 65–75, 2014. View at Publisher · View at Google Scholar
  • R. Njemini, O. O. Onyema, W. Renmans, I. Bautmans, M. De Waele, and T. Mets, “Shortcomings in the Application of Multicolour Flow Cytometry in Lymphocyte Subsets Enumeration,” Scandinavian Journal of Immunology, vol. 79, no. 2, pp. 75–89, 2014. View at Publisher · View at Google Scholar
  • Sigal Cohen, Michal Zmudjak, Catherine Colas des Francs-Small, Sunita Malik, Felix Shaya, Ido Keren, Eduard Belausov, Yair Many, Gregory G. Brown, Ian Small, and Oren Ostersetzer-Biran, “ nMAT4, a maturase factor required for nad1 pre-mRNA processing and maturation, is essential for holocomplex I biogenesis in Arabidopsis mitochondria ,” The Plant Journal, 2014. View at Publisher · View at Google Scholar
  • Oskar N. Johansson, Elena Fantozzi, Per Fahlberg, Anders K. Nilsson, Nathalie Buhot, Mahmut Tör, and Mats X. Andersson, “ Role of the penetration-resistance genes PEN1, PEN2 and PEN3 in the hypersensitive response and race-specific resistance in Arabidopsis thaliana ,” The Plant Journal, 2014. View at Publisher · View at Google Scholar
  • Manuel Hiss, Oliver Laule, Rasa M. Meskauskiene, Muhammad A. Arif, Eva L. Decker, Anika Erxleben, Wolfgang Frank, Sebastian T. Hanke, Daniel Lang, Anja Martin, Christina Neu, Ralf Reski, Sandra Richardt, Mareike Schallenberg-Rüdinger, Peter Szövényi, Theodhor Tiko, Gertrud Wiedemann, Luise Wolf, Philip Zimmermann, and Stefan A. Rensing, “ Large-scale gene expression profiling data for the model moss Physcomitrella patens aid understanding of developmental progression, culture and stress conditions ,” The Plant Journal, 2014. View at Publisher · View at Google Scholar
  • Chunni Wang, Lin Wang, Bo Su, Ning Lu, Jingjing Song, Xiaoqing Yang, Weiwei Fu, Weiwei Tan, and Bo Han, “Serine protease inhibitor Kazal type 1 promotes epithelial-mesenchymal transition through EGFR signaling pathway in prostate cancer,” The Prostate, vol. 74, no. 7, pp. 689–701, 2014. View at Publisher · View at Google Scholar
  • Amina Noor, Erchin Serpedin, Mohamed Nounou, and Hazem Nounou, “Reverse Engineering Sparse Gene Regulatory Networks Using Cubature Kalman Filter and Compressed Sensing,” Advances in Bioinformatics, vol. 2013, pp. 1–11, 2013. View at Publisher · View at Google Scholar
  • Tomas Hruz, Markus Wyss, Christoph Lucas, Oliver Laule, Peter von Rohr, Philip Zimmermann, and Stefan Bleuler, “A Multilevel Gamma-Clustering Layout Algorithm for Visualization of Biological Networks,” Advances in Bioinformatics, vol. 2013, pp. 1–10, 2013. View at Publisher · View at Google Scholar
  • Malte Brinkmeyer, and Thasso Griebel, “FlipCut Supertrees: Towards Matrix Representation Accuracy in Polynomial Ti me,” Algorithmica, vol. 67, no. 2, pp. 142–160, 2013. View at Publisher · View at Google Scholar
  • Ruth E. Wachtel, “Difficulties and Challenges Associated with Literature Searches in Operatin g Room Management, Complete with Recommendations,” Anesthesia and Analgesia, vol. 117, no. 6, pp. 1460–1479, 2013. View at Publisher · View at Google Scholar
  • Maura Begheldo, Taras Pasternak, Monica Zermiani, Ivan A. Paponov, Alexander Dovzhenko, Gianni Barcaccia, Benedetto Ruperti, and Klaus Palme, “The Arabidopsis thaliana Mob1A gene is required for organ growth and correc t tissue patterning of the root tip,” Annals of Botany, vol. 112, no. 9, pp. 1803–1814, 2013. View at Publisher · View at Google Scholar
  • Markus Schwarzlaender, and Iris Finkemeier, “Mitochondrial Energy and Redox Signaling in Plants,” Antioxidants & Redox Signaling, vol. 18, no. 16, pp. 2122–2144, 2013. View at Publisher · View at Google Scholar