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Citations to this Journal [1,039 citations: 101–200 of 1,001 articles]

Articles published in Advances in Bioinformatics have been cited 1,039 times. The following is a list of the 1,001 articles that have cited the articles published in Advances in Bioinformatics.

  • Julia Svozil, Wilhelm Gruissem, and Katja Baerenfaller, “Proteasome targeting of proteins in Arabidopsis leaf mesophyll, epidermal and vascular tissues,” Frontiers in Plant Science, vol. 6, 2015. View at Publisher · View at Google Scholar
  • Sandra S. Scholz, Michael Reichelt, Dereje W. Mekonnen, Frank Ludewig, and Axel Mithöfer, “Insect Herbivory-Elicited GABA Accumulation in Plants is a Wound-Induced, Direct, Systemic, and Jasmonate-Independent Defense Response,” Frontiers in Plant Science, vol. 6, 2015. View at Publisher · View at Google Scholar
  • Martin Janda, Vladimír Å aÅ¡ek, Hana ChmelaÅ™ová, Jan Andrejch, Miroslava Nováková, Jana HajÅ¡lová, Lenka Burketová, and Olga Valentová, “Phospholipase D affects translocation of NPR1 to the nucleus in Arabidopsis thaliana,” Frontiers in Plant Science, vol. 6, 2015. View at Publisher · View at Google Scholar
  • Habib Mahjoubi, Chantal Ebel, and Moez Hanin, “Molecular and functional characterization of the durum wheat TdRL1, a member of the conserved Poaceae RSS1-like family that exhibits features of intrinsically disordered proteins and confers stress tolerance in yeast,” Functional & Integrative Genomics, 2015. View at Publisher · View at Google Scholar
  • Henry A Adeola, Bridget Calder, Nelson C Soares, Lisa Kaestner, Jonathan M Blackburn, and Luiz F Zerbini, “ In silico verification and parallel reaction monitoring prevalidation of potential prostate cancer biomarkers ,” Future Oncology, 2015. View at Publisher · View at Google Scholar
  • Anja Voigt, Joan Ribot, Agustín G. Sabater, Andreu Palou, M. Luisa Bonet, and Susanne Klaus, “Identification of Mest/Peg1 gene expression as a predictive biomarker of adipose tissue expansion sensitive to dietary anti-obesity interventions,” Genes & Nutrition, vol. 10, no. 5, 2015. View at Publisher · View at Google Scholar
  • Sun-Goo Hwang, Dong Sub Kim, Jung Eun Hwang, Hyeon Mi Park, and Cheol Seong Jang, “Identification of altered metabolic pathways of γ-irradiated rice mutant via network-based transcriptome analysis,” Genetica, 2015. View at Publisher · View at Google Scholar
  • Dola Mukherjee, Ashutosh Mukherjee, and Tapash Chandra Ghosh, “ Evolutionary Rate Heterogeneity of Primary and Secondary Metabolic Pathway Genes in Arabidopsis thaliana ,” Genome Biology and Evolution, vol. 8, no. 1, pp. 17–28, 2015. View at Publisher · View at Google Scholar
  • Recep Vatansever, Ertugrul Filiz, and Ibrahim Ilker Ozyigit, “Genome-wide analysis of iron-regulated transporter 1 (IRT1) genes in plants,” Horticulture Environment And Biotechnology, vol. 56, no. 4, pp. 516–523, 2015. View at Publisher · View at Google Scholar
  • Marharyta Petukh, Tugba G. Kucukkal, and Emil Alexov, “On Human Disease-Causing Amino Acid Variants: Statistical Study of Sequence and Structural Patterns,” Human Mutation, 2015. View at Publisher · View at Google Scholar
  • Eniko Szekely, Arnaud Sallaberry, Faraz Zaidi, and Pascal Poncelet, “A Graph-Based Method for Detecting Rare Events: Identifying Pathologic Cells,” IEEE Computer Graphics and Applications, vol. 35, no. 3, pp. 65–73, 2015. View at Publisher · View at Google Scholar
  • Monalisa Mandal, Jyotirmay Mondal, and Anirban Mukhopadhyay, “A PSO-Based Approach for Pathway Marker Identification From Gene Expression Data,” Ieee Transactions On Nanobioscience, vol. 14, no. 6, pp. 591–597, 2015. View at Publisher · View at Google Scholar
  • Wu Li, Xiangyu Fan, Quanxin Long, Longxiang Xie, and Jianping Xie, “Mycobacterium tuberculosis Effectors Involved in Host-Pathogen Interaction Revealed by a Multiple Scales Integrative Pipeline,” Infection, Genetics and Evolution, 2015. View at Publisher · View at Google Scholar
  • Filippo Galgani, Paul Compton, and Achim Hoffmann, “Summarization based on bi-directional citation analysis,” Information Processing & Management, vol. 51, no. 1, pp. 1–24, 2015. View at Publisher · View at Google Scholar
  • Gaoyuan Zhang, Fengde Wang, Jingjuan Li, Qian Ding, Yihui Zhang, Huayin Li, Jiannong Zhang, and Jianwei Gao, “Genome-Wide Identification and Analysis of the VQ Motif-Containing Protein Family in Chinese Cabbage (Brassica rapa L. ssp. Pekinensis),” International Journal of Molecular Sciences, vol. 16, no. 12, pp. 28683–28704, 2015. View at Publisher · View at Google Scholar
  • Jyh-Jong Tsay, Shih-Chieh Su, and Chin-Sheng Yu, “A Multi-Objective Approach for Protein Structure Prediction Based on an Energy Model and Backbone Angle Preferences,” International Journal Of Molecular Sciences, vol. 16, no. 7, pp. 15136–15149, 2015. View at Publisher · View at Google Scholar
  • Daniel Felix Ahelegbey, Monica Billio, and Roberto Casarin, “Bayesian Graphical Models for STructural Vector Autoregressive Processes,” Journal of Applied Econometrics, 2015. View at Publisher · View at Google Scholar
  • Toyofumi Fujiwara, and Yasunori Yamamoto, “Colil: a database and search service for citation contexts in the life sciences domain,” Journal of Biomedical Semantics, vol. 6, no. 1, 2015. View at Publisher · View at Google Scholar
  • Xuben Hou, Jintong Du, Renshuai Liu, Yi Zhou, Minyong Li, Wenfang Xu, and Hao Fang, “Enhancing the Sensitivity of Pharmacophore-Based Virtual Screening by Incorporating Customized ZBG Features: A Case Study Using Histone Deacetylase 8,” Journal of Chemical Information and Modeling, pp. 150316150556004, 2015. View at Publisher · View at Google Scholar
  • Laetitia Bourgeade, Cédric Chauve, and Julien Allali, “Chaining Sequence/Structure Seeds for Computing RNA Similarity,” Journal of Computational Biology, vol. 22, no. 3, pp. 205–217, 2015. View at Publisher · View at Google Scholar
  • Pei-Shan Chien, Hong Gil Nam, and Yet-Ran Chen, “ A salt-regulated peptide derived from the CAP superfamily protein negatively regulates salt-stress tolerance in Arabidopsis ,” Journal of Experimental Botany, vol. 66, no. 17, pp. 5301–5313, 2015. View at Publisher · View at Google Scholar
  • Cecilia Borassi, Ana R. Sede, Martin A. Mecchia, Juan D. Salgado Salter, Eliana Marzol, Jorge P. Muschietti, and Jose M. Estevez, “An update on cell surface proteins containing extensin-motifs,” Journal of Experimental Botany, pp. erv455, 2015. View at Publisher · View at Google Scholar
  • Stephanie P. Mueller, Daniel M. Krause, Martin J. Mueller, and Agnes Fekete, “ Accumulation of extra-chloroplastic triacylglycerols in Arabidopsis seedlings during heat acclimation ,” Journal of Experimental Botany, vol. 66, no. 15, pp. 4517–4526, 2015. View at Publisher · View at Google Scholar
  • Pedro Barreto, Vagner Okura, Izabella A. Pena, Renato Maia, Ivan G. Maia, and Paulo Arruda, “ Overexpression of mitochondrial uncoupling protein 1 (UCP1) induces a hypoxic response in Nicotiana tabacum leaves ,” Journal of Experimental Botany, pp. erv460, 2015. View at Publisher · View at Google Scholar
  • Salvador Eugenio C. Caoili, “An integrative structure-based framework for predicting biological effects mediated by antipeptide antibodies,” Journal of Immunological Methods, 2015. View at Publisher · View at Google Scholar
  • Chiming Guo, Chengke Luo, Lijia Guo, Min Li, Xiaoling Guo, Yuxia Zhang, Liangjiang Wang, and Liang Chen, “ OsSIDP366 , a DUF1644 gene, positively regulates responses to drought and salt stresses in rice ,” Journal of Integrative Plant Biology, 2015. View at Publisher · View at Google Scholar
  • Liang Yang, Qiaohong Liu, Zhibin Liu, Hao Yang, Jianmei Wang, Xufeng Li, and Yi Yang, “ Arabidopsis C3HC4-RING finger E3 ubiquitin ligase AtAIRP4 positively regulates stress-responsive abscisic acid signaling ,” Journal of Integrative Plant Biology, vol. 58, no. 1, pp. 67–80, 2015. View at Publisher · View at Google Scholar
  • Rahman Alizadeh, Imtiyaz Yousuf, Mohd Afzal, Saurabh Srivastav, Saripella Srikrishna, and Farukh Arjmand, “Enantiomeric fluoro–substituted benzothiazole Schiff base–valine Cu(II)/Zn(II) complexes as chemotherapeutic agents: DNA binding profile, cleavage activity, MTT assay and cell imaging studies,” Journal of Photochemistry and Photobiology B: Biology, 2015. View at Publisher · View at Google Scholar
  • Rahman Alizadeh, Imtiyaz Yousuf, Mohd Afzal, Saurabh Srivastav, Saripella Srikrishna, and Farukh Arjmand, “Enantiomeric fluoro-substituted benzothiazole Schiff base-valine Cu(II)/Zn(II) complexes as chemotherapeutic agents: DNA binding profile, cleavage act,” Journal Of Photochemistry And Photobiology B-Biology, vol. 143, pp. 61–73, 2015. View at Publisher · View at Google Scholar
  • Krisztina Bela, Edit Horváth, Ágnes Gallé, László Szabados, Irma Tari, and Jolán Csiszár, “Plant glutathione peroxidases: Emerging role of the antioxidant enzymes in plant development and stress responses,” Journal of Plant Physiology, vol. 176, pp. 192–201, 2015. View at Publisher · View at Google Scholar
  • Chang Gyo Jung, Sun-Goo Hwang, Yong Chan Park, Hyeon Mi Park, Dong Sub Kim, Duck Hwan Park, and Cheol Seong Jang, “Molecular characterization of the cold- and heat-induced Arabidopsis PXL1 gene and its potential role in transduction pathways under temperature fluctuations,” Journal of Plant Physiology, vol. 176, pp. 138–146, 2015. View at Publisher · View at Google Scholar
  • Limin Li, Kiyoko F. Aoki-Kinoshita, Wai-Ki Ching, and Hao Jiang, “On using physico-chemical properties of amino acids in string kernels for protein classification via support vector machines,” Journal of Systems Science and Complexity, 2015. View at Publisher · View at Google Scholar
  • Cate Speake, Scott Presnell, Kelly Domico, Brad Zeitner, Anna Bjork, David Anderson, Michael J. Mason, Elizabeth Whalen, Olivia Vargas, Dimitry Popov, Darawan Rinchai, Noemie Jourde-Chiche, Laurent Chiche, Charlie Quinn, and Damien Chaussabel, “An interactive web application for the dissemination of human systems immunology data,” Journal of Translational Medicine, vol. 13, no. 1, 2015. View at Publisher · View at Google Scholar
  • Ki Joon Cho, Bert Schepens, Jong Hyeon Seok, Sella Kim, Kenny Roose, Ji-Hye Lee, Rodrigo Gallardo, Evelien Van Hamme, Joost Schymkowitz, Frederic Rousseau, Walter Fiers, Xavier Saelens, and Kyung Hyun Kim, “Structure of the Extracellular Domain of Matrix Protein 2 of Influenza A Virus in Complex with a Protective Monoclonal Antibody,” Journal Of Virology, vol. 89, no. 7, pp. 3700–3711, 2015. View at Publisher · View at Google Scholar
  • Mukesh Kumar, and Santanu Kumar Rath, “Classification of Microarray using MapReduce based Proximal Support Vector Machine Classifier,” Knowledge-Based Systems, 2015. View at Publisher · View at Google Scholar
  • Pieter Meysman, Kevin Titeca, Sven Eyckerman, Jan Tavernier, Bart Goethals, Lennart Martens, Dirk Valkenborg, and Kris Laukens, “Protein complex analysis: From raw protein lists to protein interaction networks,” Mass Spectrometry Reviews, 2015. View at Publisher · View at Google Scholar
  • Jianing Xu, Shanshan Xing, Haoran Cui, Xuesen Chen, and Xiaoyun Wang, “Genome-wide identification and characterization of the apple (Malus domestica) HECT ubiquitin-protein ligase family and expression analysis of their responsiveness to abiotic stresses,” Molecular Genetics and Genomics, 2015. View at Publisher · View at Google Scholar
  • Frédéric Bringaud, Marc Biran, Yoann Millerioux, Marion Wargnies, Stefan Allmann, and Muriel Mazet, “Combining reverse genetics and nuclear magnetic resonance-based metabolomics unravels trypanosome-specific metabolic pathways,” Molecular Microbiology, 2015. View at Publisher · View at Google Scholar
  • Rui Chen, Li-Ping Shen, Dong-Hui Wang, Fu-Gui Wang, Hong-Yun Zeng, Zhi-Shan Chen, Yi-Ben Peng, Ya-Nan Lin, Xing Tang, Ming-Hua Deng, Nan Yao, Jing-Chu Luo, Zhi-Hong Xu, and Shu-Nong Bai, “A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58,” Molecular Plant, 2015. View at Publisher · View at Google Scholar
  • Hongli Ji, Godelieve Gheysen, Chhana Ullah, Ruben Verbeek, Chenjing Shang, David De Vleesschauwer, Monica Höfte, and Tina Kyndt, “The role of thionins in rice defence against root pathogens,” Molecular Plant Pathology, 2015. View at Publisher · View at Google Scholar
  • Lucas Parada, Carlos Herrera, Mauricio Sepúlveda, and Víctor Parada, “Evolution of new algorithms for the binary knapsack problem,” Natural Computing, 2015. View at Publisher · View at Google Scholar
  • Nicolás M. Cecchini, Kevin Steffes, Michael R. Schläppi, Andrew N. Gifford, and Jean T. Greenberg, “Arabidopsis AZI1 family proteins mediate signal mobilization for systemic defence priming,” Nature Communications, vol. 6, pp. 7658, 2015. View at Publisher · View at Google Scholar
  • Emeran A. Mayer, Jennifer S. Labus, Kirsten Tillisch, Steven W. Cole, and Pierre Baldi, “Towards a systems view of IBS,” Nature Reviews Gastroenterology & Hepatology, 2015. View at Publisher · View at Google Scholar
  • Tatjana Peskan-Berghöfer, Amaya Vilches-Barro, Teresa M. Müller, Erich Glawischnig, Michael Reichelt, Jonathan Gershenzon, and Thomas Rausch, “ Sustained exposure to abscisic acid enhances the colonization potential of the mutualist fungus Piriformospora indica on Arabidopsis thaliana roots ,” New Phytologist, 2015. View at Publisher · View at Google Scholar
  • Anil Kumar, Rajesh Kumar Pathak, Sanjay Mohan Gupta, Vikram Singh Gaur, and Dinesh Pandey, “Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability,” OMICS: A Journal of Integrative Biology, vol. 19, no. 10, pp. 581–601, 2015. View at Publisher · View at Google Scholar
  • Mateusz Bujko, Paulina Kober, Michal Mikula, Marcin Ligaj, Jerzy Ostrowski, and Janusz Aleksander Siedlecki, “Expression changes of cell-cell adhesion-related genes in colorectal tumors,” Oncology Letters, vol. 9, no. 6, pp. 2463–2470, 2015. View at Publisher · View at Google Scholar
  • G.R. Banik, G. Khandaker, and H. Rashid, “Middle East Respiratory Syndrome Coronavirus “MERS-CoV”: Current Knowledge Gaps,” Paediatric Respiratory Reviews, 2015. View at Publisher · View at Google Scholar
  • Majid Masso, “Modeling functional changes to Escherichia coli thymidylate synthase upon single residue replacements: a structure-based approach,” Peerj, vol. 3, 2015. View at Publisher · View at Google Scholar
  • Hao Ye, Joe Meehan, Weida Tong, and Huixiao Hong, “Alignment of Short Reads: A Crucial Step for Application of Next-Generation Sequencing Data in Precision Medicine,” Pharmaceutics, vol. 7, no. 4, pp. 523–541, 2015. View at Publisher · View at Google Scholar
  • Meike Hüdig, Alexander Maier, Isabell Scherrers, Laura Seidel, Erwin E.W. Jansen, Tabea Mettler-Altmann, Martin K.M. Engqvist, and Veronica G. Maurino, “Plants Possess a Cyclic Mitochondrial Metabolic Pathway similar to the Mammalian Metabolic Repair Mechanism Involving Malate Dehydrogenase and l-2-Hydroxyglutarate Dehydrogenase,” Plant and Cell Physiology, pp. pcv108, 2015. View at Publisher · View at Google Scholar
  • H. Yu, M. Soler, H. San Clemente, I. Mila, J. A. P. Paiva, A. A. Myburg, M. Bouzayen, J. Grima-Pettenati, and H. Cassan-Wang, “Comprehensive Genome-Wide Analysis of the Aux/IAA Gene Family in Eucalyptus: Evidence for the Role of EgrIAA4 in Wood Formation,” Plant and Cell Physiology, 2015. View at Publisher · View at Google Scholar
  • J. Novak, M.  erny, J. Pavl , J. Zemankova, J. Skalak, L. Pla kova, and B. Brzobohaty, “Roles of Proteome Dynamics and Cytokinin Signaling in Root to Hypocotyl Ratio Changes Induced by Shading Roots of Arabidopsis Seedlings,” Plant and Cell Physiology, 2015. View at Publisher · View at Google Scholar
  • Jiao Wang, Shanshan Chu, Ying Zhu, Hao Cheng, and Deyue Yu, “Positive selection drives neofunctionalization of the UbiA prenyltransferase gene family,” Plant Molecular Biology, vol. 87, no. 4-5, pp. 383–394, 2015. View at Publisher · View at Google Scholar
  • Xiang Wang, Wen-Yan Li, Mao-Mao Zhang, Yin-Tao Gao, Wen-Ting Liu, Wen-Qiang Li, Izhar Muhammad, and Kun-Ming Chen, “Identification and Functional Analysis of the NADK Gene Family in Wheat,” Plant Molecular Biology Reporter, 2015. View at Publisher · View at Google Scholar
  • Aurine Verkest, Marina Byzova, Cindy Martens, Patrick Willems, Tom Verwulgen, Bram Slabbinck, Debbie Rombaut, Jan Van de Velde, Klaas Vandepoele, Evi Standaert, Marrit Peeters, Mieke Van Lijsebettens, Frank Van Breusegem, and Marc De Block, “Selection for Improved Energy Use Efficiency and Drought Tolerance in Canola Results in Distinct Transcriptome and Epigenome Changes,” Plant Physiology, vol. 168, no. 4, pp. 1338–U1426, 2015. View at Publisher · View at Google Scholar
  • Nicolas Navrot, Nicklas Skjoldager, Jakob Bunkenborg, Birte Svensson, and Per Hägglund, “A redox-dependent dimerization switch regulates activity and tolerance for reactive oxygen species of barley seed glutathione peroxidase,” Plant Physiology and Biochemistry, 2015. View at Publisher · View at Google Scholar
  • Janet A. Minton, Micah Rapp, Amanda J. Stoffer, Neil P. Schultes, and George S. Mourad, “Heterologous complementation studies reveal the solute transport profiles of a two-member Nucleobase Cation Symporter 1 (NCS1) family in Physcomitrella patens,” Plant Physiology and Biochemistry, 2015. View at Publisher · View at Google Scholar
  • Susanne Uebler, Mihaela L. Márton, and Thomas Dresselhaus, “Classification of EA1-box proteins and new insights into their role during reproduction in grasses,” Plant Reproduction, vol. 28, no. 3-4, pp. 183–197, 2015. View at Publisher · View at Google Scholar
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  • Grzegorz Moniuszko, “Ethylene signaling pathway is not linear, however its' lateral part is responsible for sensing and signaling of sulfur status in plants,” Plant Signaling & Behavior, pp. 00–00, 2015. View at Publisher · View at Google Scholar
  • Tetiana Kalachova, Volodymyr Kravets, Alain Zachowski, and Eric Ruelland, “Importance of phosphoinositide-dependent signaling pathways in the control of gene expression in resting cells and in response to phytohormones,” Plant Signaling & Behavior, vol. 10, no. 5, pp. e1019983, 2015. View at Publisher · View at Google Scholar
  • Javier Cabrera, Carmen Fenoll, and Carolina Escobar, “ Genes co-regulated with LBD16 in nematode feeding sites inferred from in silico analysis show similarities to regulatory circuits mediated by the auxin/cytokinin balance in Arabidopsis ,” Plant Signaling & Behavior, pp. 00–00, 2015. View at Publisher · View at Google Scholar
  • Yunqing Yu, and Sarah M. Assmann, “ The effect of NaCl on stomatal opening in Arabidopsis wild type and agb1 heterotrimeric G-protein mutant plants ,” Plant Signaling & Behavior, pp. 00–00, 2015. View at Publisher · View at Google Scholar
  • Erik van Dijk, Arlo Hoogeveen, and Sanne Abeln, “The Hydrophobic Temperature Dependence of Amino Acids Directly Calculated from Protein Structures,” Plos Computational Biology, vol. 11, no. 5, 2015. View at Publisher · View at Google Scholar
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  • Miguel Ponce-de-Leon, Jorge Calle-Espinosa, Juli Pereto, and Francisco Montero, “Consistency Analysis of Genome-Scale Models of Bacterial Metabolism: A Metamodel Approach,” Plos One, vol. 10, no. 12, 2015. View at Publisher · View at Google Scholar
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  • Tarikul Huda Mazumder, and Supriyo Chakraborty, “Gaining Insights into the Codon Usage Patterns of TP53 Gene across Eight Mammalian Species,” Plos One, vol. 10, no. 3, 2015. View at Publisher · View at Google Scholar
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  • Aurélien Boisson-Dernier, Christina Maria Franck, Dmytro S. Lituiev, and Ueli Grossniklaus, “ Receptor-like cytoplasmic kinase MARIS functions downstream of Cr RLK1L-dependent signaling during tip growth ,” Proceedings of the National Academy of Sciences, vol. 112, no. 39, pp. 12211–12216, 2015. View at Publisher · View at Google Scholar
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