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Citations to this Journal [1,134 citations: 101–200 of 1,092 articles]

Articles published in Advances in Bioinformatics have been cited 1,134 times. The following is a list of the 1,092 articles that have cited the articles published in Advances in Bioinformatics.

  • Kin Pan Chung, Yonglun Zeng, and Liwen Jiang, “COPII Paralogs in Plants: Functional Redundancy or Diversity?,” Trends in Plant Science, 2016. View at Publisher · View at Google Scholar
  • Yucel Kocyigit, “Heart sound signal classification using fast independent component analysis,” Turkish Journal Of Electrical Engineering And Computer Sciences, vol. 24, no. 4, pp. 2949–2960, 2016. View at Publisher · View at Google Scholar
  • Zena M. Hira, and Duncan F. Gillies, “A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data,” Advances in Bioinformatics, vol. 2015, pp. 1–13, 2015. View at Publisher · View at Google Scholar
  • Taegun Kwon, J. Alan Sparks, Jin Nakashima, Stacy N. Allen, Yuhong Tang, and Elison B. Blancaflor, “Transcriptional Response Of Arabidopsis Seedlings During Spaceflight Reveals Peroxidase And Cell Wall Remodeling Genes Associated With Root Hair Devel,” American Journal Of Botany, vol. 102, no. 1, pp. 21–35, 2015. View at Publisher · View at Google Scholar
  • Mariana Moysés-Oliveira, Roberta Santos Guilherme, Vera Ayres Meloni, Adriana Di Battista, Claudia Berlim de Mello, Silvia Bragagnolo, Danilo Moretti-Ferreira, Nadezda Kosyakova, Thomas Liehr, Gianna Maria Carvalheira, and Maria Isabel Melaragno, “X-linked intellectual disability related genes disrupted by balanced X-autosome translocations,” American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 2015. View at Publisher · View at Google Scholar
  • E. Sobieszczuk-Nowicka, A. Zmienko, A. Samelak-Czajka, M. Łuczak, M. Pietrowska-Borek, R. Iorio, S. Del Duca, M. Figlerowicz, and J. Legocka, “Dark-induced senescence of barley leaves involves activation of plastid transglutaminases,” Amino Acids, 2015. View at Publisher · View at Google Scholar
  • Xiaojun Pu, Xin Lv, Tinghong Tan, Faqiong Fu, Gongwei Qin, and Honghui Lin, “Roles of mitochondrial energy dissipation systems in plant development and acclimation to stress,” Annals of Botany, pp. mcv063, 2015. View at Publisher · View at Google Scholar
  • Qihua Ling, and Paul Jarvis, “Functions of plastid protein import and the ubiquitin-proteasome system in plastid development,” Biochimica et Biophysica Acta (BBA) - Bioenergetics, 2015. View at Publisher · View at Google Scholar
  • Jozef Nahalka, Eva Hrabarova, and Klaudia Talafova, “Protein-RNA and protein-glycan recognitions in light of amino acid codes,” Biochimica et Biophysica Acta (BBA) - General Subjects, 2015. View at Publisher · View at Google Scholar
  • Larissa Balabanova, Vasily Golotin, Anna Podvolotskaya, and Valery Rasskazov, “Genetically modified proteins: functional improvement and chimeragenesis,” Bioengineered, pp. 00–00, 2015. View at Publisher · View at Google Scholar
  • Rainer Waadt, Po-Kai Hsu, and Julian I. Schroeder, “Abscisic acid and other plant hormones: Methods to visualize distribution and signaling,” BioEssays, vol. 37, no. 12, pp. 1338–1349, 2015. View at Publisher · View at Google Scholar
  • Yusuke Komiyama, Masaki Banno, Kokoro Ueki, Gul Saad, and Kentaro Shimizu, “Automatic generation of bioinformatics tools for predicting protein–ligand binding sites,” Bioinformatics, vol. 32, no. 6, pp. 901–907, 2015. View at Publisher · View at Google Scholar
  • Jimmy Ka Ho Chiu, and Yi-Ping Phoebe Chen, “Pairwise RNA secondary structure alignment with conserved stem pattern,” Bioinformatics, vol. 31, no. 24, pp. 3914–3921, 2015. View at Publisher · View at Google Scholar
  • Jeremy Hyrkas, Sophie Clayton, Francois Ribalet, Daniel Halperin, E. Virginia Armbrust, and Bill Howe, “Scalable clustering algorithms for continuous environmental flow cytometry,” Bioinformatics, vol. 32, no. 3, pp. 417–423, 2015. View at Publisher · View at Google Scholar
  • Tae-Hyuk Ahn, Juanjuan Chai, and Chongle Pan, “Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance,” Bioinformatics, vol. 31, no. 2, pp. 170–177, 2015. View at Publisher · View at Google Scholar
  • Agne Antanaviciute, Christopher M. Watson, Sally M. Harrison, Carolina Lascelles, Laura Crinnion, Alexander F. Markham, David T. Bonthron, and Ian M. Carr, “OVA: integrating molecular and physical phenotype data from multiple biomedical domain ontologies with variant filtering for enhanced variant prioriti,” Bioinformatics, vol. 31, no. 23, pp. 3822–3829, 2015. View at Publisher · View at Google Scholar
  • Yu-Pin Lin, Dongpo Deng, Wei-Chih Lin, Rob Lemmens, Neville D. Crossman, Klaus Henle, and Dirk S. Schmeller, “Uncertainty analysis of crowd-sourced and professionally collected field data used in species distribution models of Taiwanese moths,” Biological Conservation, vol. 181, pp. 102–110, 2015. View at Publisher · View at Google Scholar
  • Tilahun Melak, and Sunita Gakkhar, “ Comparative Genome and Network Centrality Analysis to Identify Drug Targets of Mycobacterium tuberculosis H37Rv ,” BioMed Research International, vol. 2015, pp. 1–10, 2015. View at Publisher · View at Google Scholar
  • Shuang Leng, Ru San Tan, Kevin Tshun Chuan Chai, Chao Wang, Dhanjoo Ghista, and Liang Zhong, “The electronic stethoscope,” BioMedical Engineering OnLine, vol. 14, no. 1, 2015. View at Publisher · View at Google Scholar
  • Xiangyang Li, Jing Liu, Xia Yang, Yan Ding, Jian Wu, Deyu Hu, and Baoan Song, “Studies of Binding Interactions between Dufulin and Southern Rice Black-Streaked Dwarf Virus P9-1,” Bioorganic & Medicinal Chemistry, 2015. View at Publisher · View at Google Scholar
  • Lin Lin, Cliburn Chan, and Mike West, “Discriminative variable subsets in Bayesian classification with mixture models, with application in flow cytometry studies,” Biostatistics, pp. kxv021, 2015. View at Publisher · View at Google Scholar
  • Ying Wang, Haiyan Hu, and Xiaoman Li, “MBBC: an efficient approach for metagenomic binning based on clustering,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Michael A. Peabody, Thea Van Rossum, Raymond Lo, and Fiona S. L. Brinkman, “Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Raluca Uricaru, Célia Michotey, Hélène Chiapello, and Eric Rivals, “YOC, A new strategy for pairwise alignment of collinear genomes,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Felix Schönenberger, Anja Deutzmann, Elisa Ferrando-May, and Dorit Merhof, “Discrimination of cell cycle phases in PCNA-immunolabeled cells,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, and Filip Ginter, “Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis,” Bmc Bioinformatics, vol. 16, 2015. View at Publisher · View at Google Scholar
  • Tianmin Wang, Hiroshi Mori, Chong Zhang, Ken Kurokawa, Xin-Hui Xing, and Takuji Yamada, “DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Jonathan R Karr, Harendra Guturu, Edward Y Chen, Stuart L Blair, Jonathan M Irish, Nikesh Kotecha, and Markus W Covert, “NetworkPainter: dynamic intracellular pathway animation in Cytobank,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Izza Nasrullah, Azeem M. Butt, Shifa Tahir, Muhammad Idrees, and Yigang Tong, “Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution,” Bmc Evolutionary Biology, vol. 15, 2015. View at Publisher · View at Google Scholar
  • Giacomo Diaz, Fausto Zamboni, Ashley Tice, and Patrizia Farci, “Integrated ordination of miRNA and mRNA expression profiles,” Bmc Genomics, vol. 16, 2015. View at Publisher · View at Google Scholar
  • Dayong Li, Fuyou Fu, Huijuan Zhang, and Fengming Song, “Genome-wide systematic characterization of the bZIP transcriptional factor family in tomato (Solanum lycopersicum L.),” BMC Genomics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Juliana Nogueira Brasil, Luiz Mors Cabral, Nubia B. Eloy, Luiza M. F. Primo, Ito Liberato Barroso-Neto, Letícia P. Perdigão Grangeiro, Nathalie Gonzalez, Dirk Inzé, Paulo C. G. Ferreira, and Adriana S. Hemerly, “AIP1 is a novel Agenet/Tudor domain protein from Arabidopsis that interacts with regulators of DNA replication, transcription and chromatin remodeling,” BMC Plant Biology, vol. 15, no. 1, 2015. View at Publisher · View at Google Scholar
  • Devin H Currie, Babu Raman, Christopher M Gowen, Timothy J Tschaplinski, Miriam L Land, Steven D Brown, Sean F Covalla, Dawn M Klingeman, Zamin K Yang, Nancy L Engle, Courtney M Johnson, Miguel Rodriguez, A Joe Shaw, William R Kenealy, Lee R Lynd, Stephen S Fong, Jonathan R Mielenz, Brian H Davison, David A Hogsett, and Christopher D Herring, “Genome-scale resources for Thermoanaerobacterium saccharolyticum,” BMC Systems Biology, vol. 9, no. 1, 2015. View at Publisher · View at Google Scholar
  • Chengkun Wu, Jean-Marc Schwartz, Georg Brabant, Shao-Liang Peng, and Goran Nenadic, “Constructing a molecular interaction network for thyroid cancer via large-scale text mining of gene and pathway events,” Bmc Systems Biology, vol. 9, 2015. View at Publisher · View at Google Scholar
  • Junko Tsuji, and Zhiping Weng, “Evaluation of preprocessing, mapping and postprocessing algorithms for analyzing whole genome bisulfite sequencing data,” Briefings in Bioinformatics, pp. bbv103, 2015. View at Publisher · View at Google Scholar
  • Tara Kiran, Alexander Kopp, Rahim Moineddin, and Richard H. Glazier, “Longitudinal evaluation of physician payment reform and team-based care for chronic disease management and prevention,” Canadian Medical Association Journal, vol. 187, no. 17, pp. E494–E502, 2015. View at Publisher · View at Google Scholar
  • Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, and Pierre Goloubinoff, “Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs,” Cell Stress and Chaperones, 2015. View at Publisher · View at Google Scholar
  • Cécile Vriet, Lars Hennig, and Christophe Laloi, “Stress-induced chromatin changes in plants: of memories, metabolites and crop improvement,” Cellular and Molecular Life Sciences, 2015. View at Publisher · View at Google Scholar
  • Hamid Babamoradi, José Manuel Amigo, Frans van den Berg, Morten Rønn Petersen, Nana Satake, and Gry Boe-Hansen, “Quality assessment of boar semen by multivariate analysis of flow cytometric data,” Chemometrics and Intelligent Laboratory Systems, vol. 142, pp. 219–230, 2015. View at Publisher · View at Google Scholar
  • Tilahun Melak, and Sunita Gakkhar, “Maximum flow approach to prioritize potential drug targets of Mycobacterium tuberculosis H37Rv from protein-protein interaction network,” Clinical and Translational Medicine, vol. 4, no. 1, 2015. View at Publisher · View at Google Scholar
  • Wei-Po Lee, and Chung-Hsun Lin, “Combining Expression Data and Knowledge Ontology for Gene Clustering and Network Reconstruction,” Cognitive Computation, 2015. View at Publisher · View at Google Scholar
  • Jorge A. Vanegas, Sérgio Matos, Fabio González, and José L. Oliveira, “An Overview of Biomolecular Event Extraction from Scientific Documents,” Computational and Mathematical Methods in Medicine, vol. 2015, pp. 1–19, 2015. View at Publisher · View at Google Scholar
  • Ertugrul Filiz, Ibrahim Ilker Ozyigit, and Recep Vatansever, “Genome-wide identification of galactinol synthase (GolS) genes in Solanum lycopersicum and Brachypodium distachyon,” Computational Biology and Chemistry, vol. 58, pp. 149–157, 2015. View at Publisher · View at Google Scholar
  • Vimal K. Shrivastava, Narendra D. Londhe, Rajendra S. Sonawane, and Jasjit S. Suri, “First Review on Psoriasis Severity Risk Stratification: An Engineering Perspective,” Computers in Biology and Medicine, 2015. View at Publisher · View at Google Scholar
  • Vimal K. Shrivastava, Narendra D. Londhe, Rajendra S. Sonawane, and Jasjit S. Suri, “Exploring the Color Feature Power for Psoriasis Risk Stratification and Classification: A Data mining Paradigm,” Computers in Biology and Medicine, 2015. View at Publisher · View at Google Scholar
  • Mj Gilkey, V Krishnan, L Scheetz, X Jia, Ak Rajasekaran, and Ps Dhurjati, “Physiologically Based Pharmacokinetic Modeling of Fluorescently Labeled Block Copolymer Nanoparticles for Controlled Drug Delivery in Leukemia Therapy,” CPT: Pharmacometrics & Systems Pharmacology, vol. 4, no. 3, pp. 167–174, 2015. View at Publisher · View at Google Scholar
  • Qihua Ling, and Paul Jarvis, “Regulation of Chloroplast Protein Import by the Ubiquitin E3 Ligase SP1 Is Important for Stress Tolerance in Plants,” Current Biology, 2015. View at Publisher · View at Google Scholar
  • Serena Di Palma, and Bernd Bodenmiller, “Unraveling cell populations in tumors by single-cell mass cytometry,” Current Opinion In Biotechnology, vol. 31, pp. 122–129, 2015. View at Publisher · View at Google Scholar
  • Justin W. Walley, and Steven P. Briggs, “Dual use of peptide mass spectra: Protein atlas and genome annotation,” Current Plant Biology, vol. 2, pp. 21–24, 2015. View at Publisher · View at Google Scholar
  • Dóra Szakonyi, Sofie Van Landeghem, Katja Baerenfaller, Lieven Baeyens, Jonas Blomme, Rubén Casanova-Sáez, Stefanie De Bodt, David Esteve-Bruna, Fabio Fiorani, Nathalie Gonzalez, Jesper Grønlund, Richard G.H. Immink, Sara Jover-Gil, Asuka Kuwabara, Tamara Muñoz-Nortes, Aalt D.J. van Dijk, David Wilson-Sánchez, Vicky Buchanan-Wollaston, Gerco C. Angenent, Yves Van de Peer, Dirk Inzé, José Luis Micol, Wilhelm Gruissem, Sean Walsh, and Pierre Hilson, “The KnownLeaf literature curation system captures knowledge about Arabidopsis leaf growth and development and facilitates integrated data mining,” Current Plant Biology, 2015. View at Publisher · View at Google Scholar
  • Lin Lin, Jacob Frelinger, Wenxin Jiang, Greg Finak, Chetan Seshadri, Pierre-Alexandre Bart, Giuseppe Pantaleo, Julie McElrath, Steve DeRosa, and Raphael Gottardo, “Identification and visualization of multidimensional antigen-specific T-cell populations in polychromatic cytometry data,” Cytometry Part A, vol. 87A, no. 7, pp. 675–682, 2015. View at Publisher · View at Google Scholar
  • Sofie Van Gassen, Britt Callebaut, Mary J. Van Helden, Bart N. Lambrecht, Piet Demeester, Tom Dhaene, and Yvan Saeys, “FlowSOM: Using self-organizing maps for visualization and interpretation of cytometry data,” Cytometry Part A, 2015. View at Publisher · View at Google Scholar
  • Peng Qiu, “Computational prediction of manually gated rare cells in flow cytometry data,” Cytometry Part A, 2015. View at Publisher · View at Google Scholar
  • Susanne Guenther, and Susann Mueller, “Facilitated gate setting by sequential dot plot scanning,” Cytometry Part A, vol. 87A, no. 7, pp. 661–664, 2015. View at Publisher · View at Google Scholar
  • Nima Aghaeepour, Pratip Chattopadhyay, Maria Chikina, Tom Dhaene, Sofie Van Gassen, Miron Kursa, Bart N. Lambrecht, Mehrnoush Malek, Yu Qian, Peng Qiu, Yvan Saeys, Rick Stanton, Dong Tong, Celine Vens, Sławomir Walkowiak, Kui Wang, Greg Finak, Raphael Gottardo, Tim Mosmann, Garry P. Nolan, Richard H. Scheuermann, and Ryan R. Brinkman, “A benchmark for evaluation of algorithms for identification of cellular correlates of clinical outcomes,” Cytometry Part A, 2015. View at Publisher · View at Google Scholar
  • Sofie Van Gassen, Celine Vens, Tom Dhaene, Bart N. Lambrecht, and Yvan Saeys, “FloReMi: Flow density survival regression using minimal feature redundancy,” Cytometry Part A, 2015. View at Publisher · View at Google Scholar
  • Jonathan A. Rebhahn, David R. Roumanes, Yilin Qi, Atif Khan, Juilee Thakar, Alex Rosenberg, F. Eun-Hyung Lee, Sally A. Quataert, Gaurav Sharma, and Tim R. Mosmann, “Competitive SWIFT cluster templates enhance detection of aging changes,” Cytometry Part A, 2015. View at Publisher · View at Google Scholar
  • Tiara Byrd, Karen D. Carr, John C. Norman, Leslie Huye, Meenakshi Hegde, and Nabil Ahmed, “Polystyrene microspheres enable 10-color compensation for immunophenotyping of primary human leukocytes,” Cytometry Part A, 2015. View at Publisher · View at Google Scholar
  • Xiao-jun Pu, Xin Lv, and Hong-hui Lin, “Unraveling the evolution and regulation of the alternative oxidase gene family in plants,” Development Genes and Evolution, vol. 225, no. 6, pp. 331–339, 2015. View at Publisher · View at Google Scholar
  • Jurgen R. Haanstra, and Barbara M. Bakker, “Drug target identification through systems biology,” Drug Discovery Today: Technologies, vol. 15, pp. 17–22, 2015. View at Publisher · View at Google Scholar
  • Na Cui, Zihao Song, Bencan Yang, and Liu-Min Fan, “AtTSPO, a translocator protein, in stress responses in Arabidopsis,” Environmental and Experimental Botany, 2015. View at Publisher · View at Google Scholar
  • Zhihai Chen, Dapeng Wang, Chao Gu, Xing Liu, Weiwei Pei, Jianxiang Li, Yi Cao, Yang Jiao, Jian Tong, and Jihua Nie, “Down-regulation of Let-7 microRNA Increased K-ras Expression in Lung Damage Induced by Radon,” Environmental Toxicology and Pharmacology, 2015. View at Publisher · View at Google Scholar
  • Joanna Obacz, Martina Takacova, Veronika Brychtova, Petr Dobes, Silvia Pastorekova, Borivoj Vojtesek, and Roman Hrstka, “The role of AGR2 and AGR3 in cancer: Similar but not identical,” European Journal of Cell Biology, 2015. View at Publisher · View at Google Scholar
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  • Tatyana Sklyarova, Jolanda van Hengel, Elien Van Wonterghem, Claude Libert, Frans van Roy, and Roosmarijn E. Vandenbroucke, “Hematopoietic plakophilin-3 regulates acute tissue-specific and systemic inflammation in mice,” European Journal of Immunology, 2015. View at Publisher · View at Google Scholar
  • Xingxing Mao, Dongmei Zhang, Tao Tao, Xiaojuan Liu, Xiaolei Sun, Youhua Wang, and Aiguo Shen, “O-GlcNAc glycosylation of p27kip1 promotes astrocyte migration and functional recovery after spinal cord contusion,” Experimental Cell Research, 2015. View at Publisher · View at Google Scholar
  • Lucian Beer, Veronika Mlitz, Maria Gschwandtner, Tanja Berger, Marie-Sophie Narzt, Florian Gruber, Patrick M. Brunner, Erwin Tschachler, and Michael Mildner, “Bioinformatics approach for choosing the correct reference genes when studying gene expression in human keratinocytes,” Experimental Dermatology, 2015. View at Publisher · View at Google Scholar
  • Dongbing Cui, Lujia Zhang, Shuiqin Jiang, Zhiqiang Yao, Bei Gao, Jinping Lin, Y. Adam Yuan, and Dongzhi Wei, “A computational strategy for altering an enzyme in its cofactor preference to NAD(H) and/or NADP(H),” FEBS Journal, 2015. View at Publisher · View at Google Scholar
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  • Huan Li, Xuesong Wang, Wei Liu, Xiao Wei, Weishi Lin, Erna Li, Puyuan Li, Derong Dong, Lifei Cui, Xuan Hu, Boxing Li, Yanyan Ma, Xiangna Zhao, Chao Liu, and Jing Yuan, “Survey and Visual Detection of Zaire ebolavirus in Clinical Samples Targeting the Nucleoprotein Gene in Sierra Leone,” Frontiers in Microbiology, vol. 6, 2015. View at Publisher · View at Google Scholar
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  • Anna Speiser, Stefan Haberland, Mutsumi Watanabe, Markus Wirtz, Karl-Josef Dietz, Kazuki Saito, and Rüdiger Hell, “The significance of cysteine synthesis for acclimation to high light conditions,” Frontiers in Plant Science, vol. 5, 2015. View at Publisher · View at Google Scholar
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