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Citations to this Journal [1,161 citations: 101–200 of 1,119 articles]

Articles published in Advances in Bioinformatics have been cited 1,161 times. The following is a list of the 1,119 articles that have cited the articles published in Advances in Bioinformatics.

  • Amparo Rosero, Denisa Oulehlová, Lenka Stillerová, Petra Schiebertová, Michal Grunt, Viktor Žárský, and Fatima Cvrčková, “Arabidopsis FH1 Formin Affects Cotyledon Pavement Cell Shape by Modulating Cytoskeleton Dynamics,” Plant and Cell Physiology, pp. pcv209, 2016. View at Publisher · View at Google Scholar
  • Fábia Guimarães-Dias, Anna C. Neves-Borges, Alessandra J. Conforte, Leonardo Giovanella-Kampmann, André V. J. Ferreira, Regina M. S. Amorim, Magda A. Benevent, Maria Eugênia Lisei de Sá, Rosilene O. Mesquita, Fabiana A. Rodrigues, Alexandre L. Nepomuceno, Eduardo Romano, Marcelo E. Loureiro, Maria Fátima Grossi-de-Sá, and Márcio Alves-Ferreira, “Differential Impact of Acclimation and Acute Water Deprivation in the Expression of Key Transcription Factors in Soybean Roots,” Plant Molecular Biology Reporter, 2016. View at Publisher · View at Google Scholar
  • Said Hafidh, Jan Fíla, and David Honys, “Male gametophyte development and function in angiosperms: a general concept,” Plant Reproduction, 2016. View at Publisher · View at Google Scholar
  • Facundo Romani, Pamela A. Ribone, Matías Capella, Virginia N. Miguel, and Raquel L. Chan, “A matter of quantity: Common features in the drought response of transgenic plants overexpressing HD-Zip I transcription factors,” Plant Science, 2016. View at Publisher · View at Google Scholar
  • Veena Pandey, M.W. Ansari, Suresh Tula, R.K. Sahoo, Gurdeep Bains, J. Kumar, Narendra Tuteja, and Alok Shukla, “Ocimum sanctum leaf extract induces drought stress tolerance in rice,” Plant Signaling & Behavior, pp. 00–00, 2016. View at Publisher · View at Google Scholar
  • Jean-Luc Cacas, Patricia Gerbeau-Pissot, Jérôme Fromentin, Catherine Cantrel, Dominique Thomas, Emmanuelle Jeannette, Tetiana Kalachova, Sébastien Mongrand, Françoise Simon-Plas, and Eric Ruelland, “Diacylglycerol kinases activate tobacco NADPH oxidase-dependent oxidative burst in response to cryptogein,” Plant, Cell & Environment, 2016. View at Publisher · View at Google Scholar
  • Oliver Berkowitz, Inge De Clercq, Frank Van Breusegem, and James Whelan, “Interaction between hormonal and mitochondrial signalling during growth, development and in plant defence responses,” Plant, Cell & Environment, vol. 39, no. 5, pp. 1127–1139, 2016. View at Publisher · View at Google Scholar
  • Veena Pandey, Mohammad W. Ansari, Suresh Tula, Sandep Yadav, Ranjan K. Sahoo, Nandini Shukla, Gurdeep Bains, Shail Badal, Subhash Chandra, A. K. Gaur, Atul Kumar, Alok Shukla, J. Kumar, and Narendra Tuteja, “Dose-dependent response of Trichoderma harzianum in improving drought tolerance in rice genotypes,” Planta, 2016. View at Publisher · View at Google Scholar
  • Darya Y. Orlova, Noah Zimmerman, Stephen Meehan, Connor Meehan, Jeffrey Waters, Eliver E. B. Ghosn, Alexander Filatenkov, Gleb A. Kolyagin, Yael Gernez, Shanel Tsuda, Wayne Moore, Richard B. Moss, Leonore A. Herzenberg, and Guenther Walther, “Earth Mover's Distance (EMD): A True Metric for Comparing Biomarker Expression Levels in Cell Populations,” Plos One, vol. 11, no. 3, 2016. View at Publisher · View at Google Scholar
  • Monica K. Borucki, Victoria Lao, Mona Hwang, Shea Gardner, Danielle Adney, Vincent Munster, Richard Bowen, and Jonathan E. Allen, “Middle East Respiratory Syndrome Coronavirus Intra-Host Populations Are Characterized by Numerous High Frequency Variants,” Plos One, vol. 11, no. 1, 2016. View at Publisher · View at Google Scholar
  • Hong Tran, Xiaowei Wu, Saima Tithi, Ming-An Sun, Hehuang Xie, and Liqing Zhang, “A Bayesian Assignment Method for Ambiguous Bisulfite Short Reads,” Plos One, vol. 11, no. 3, 2016. View at Publisher · View at Google Scholar
  • Jacqueline Morris, Srinivas Jayanthi, Rebekah Langston, Anna Daily, Alicia Kight, David S. McNabb, Ralph Henry, and Thallapuranam Krishnaswamy Suresh Kumar, “Heparin-binding peptide as a novel affinity tag for purification of recombinant proteins,” Protein Expression and Purification, 2016. View at Publisher · View at Google Scholar
  • Jane C.Y. Wong, Philip Thompson, James Y. Xie, Jian-Wen Qiu, and David M. Baker, “Symbiodinium clade C generality among common scleractinian corals in subtropical Hong Kong,” Regional Studies in Marine Science, 2016. View at Publisher · View at Google Scholar
  • Sarah Faulwetter, Evangelos Pafilis, Lucia Fanini, Nicolas Bailly, Donat Agosti, Christos Arvanitidis, Laura Boicenco, Terry Capatano, Simon Claus, Stefanie Dekeyzer, Teodor Georgiev, Aglaia Legaki, Dimitra Mavraki, Anastasis Oulas, Gabriella Papastefanou, Lyubomir Penev, Guido Sautter, Dmitry Schigel, Viktor Senderov, Adrian Teaca, and Marilena Tsompanou, “EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases,” Research Ideas and Outcomes, vol. 2, pp. e9774, 2016. View at Publisher · View at Google Scholar
  • Alireza Tahamtan, Christopher S. Inchley, Mona Marzban, Masoumeh Tavakoli-Yaraki, Majid Teymoori-Rad, Britt Nakstad, and Vahid Salimi, “The role of microRNAs in respiratory viral infection: friend or foe?,” Reviews in Medical Virology, 2016. View at Publisher · View at Google Scholar
  • T. Yasmin, and A. H. M. Nurun Nabi, “B and T Cell Epitope-Based Peptides Predicted from Evolutionarily Conserved and Whole Protein Sequences of Ebola Virus as Vaccine Targets,” Scandinavian Journal of Immunology, vol. 83, no. 5, pp. 321–337, 2016. View at Publisher · View at Google Scholar
  • Fabrizio Pucci, Raphael Bourgeas, and Marianne Rooman, “Predicting protein thermal stability changes upon point mutations using statistical potentials: Introducing HoTMuSiC,” Scientific Reports, vol. 6, 2016. View at Publisher · View at Google Scholar
  • Tzu-Hung Hsiao, Yu-Chiao Chiu, Pei-Yin Hsu, Tzu-Pin Lu, Liang-Chuan Lai, Mong-Hsun Tsai, Tim H.-M. Huang, Eric Y. Chuang, and Yidong Chen, “Differential network analysis reveals the genome-wide landscape of estrogen receptor modulation in hormonal cancers,” Scientific Reports, vol. 6, pp. 23035, 2016. View at Publisher · View at Google Scholar
  • Douglas E. V. Pires, Jing Chen, Tom L. Blundell, and David B. Ascher, “In silico functional dissection of saturation mutagenesis: Interpreting the relationship between phenotypes and changes in protein stability, interactions and activity,” Scientific Reports, vol. 6, pp. 19848, 2016. View at Publisher · View at Google Scholar
  • Ting Sun, Susanne S. Renner, Yuxing Xu, Yan Qin, Jianqiang Wu, and Guiling Sun, “Two hAT transposon genes were transferred from Brassicaceae to broomrapes and are actively expressed in some recipients,” Scientific Reports, vol. 6, pp. 30192, 2016. View at Publisher · View at Google Scholar
  • Ozgul Gercel, “Removal of textile dye from aqueous solution by electrochemical method,” Separation Science And Technology, vol. 51, no. 4, pp. 711–717, 2016. View at Publisher · View at Google Scholar
  • Robert Behmüller, Eva Kavkova, Stefanie Düh, Christian G. Huber, and Raimund Tenhaken, “The role of arabinokinase in arabinose toxicity in plants,” The Plant Journal, 2016. View at Publisher · View at Google Scholar
  • E.D. Farfán-García, N.T. Castillo-Mendieta, F.J. Ciprés-Flores, I.I. Padilla-Martínez, J.G. Trujillo-Ferrara, and M.A. Soriano-Ursúa, “Current data regarding the structure-toxicity relationship of boron-containing compounds,” Toxicology Letters, 2016. View at Publisher · View at Google Scholar
  • Manikandan Muthu, A. Vimala, Ordetta Hanna Mendoza, and Judy Gopal, “Tracing the voyage of SELDI-TOF MS in cancer biomarker discovery and its current depreciation trend – need for resurrection?,” TrAC Trends in Analytical Chemistry, vol. 76, pp. 95–101, 2016. View at Publisher · View at Google Scholar
  • Kin Pan Chung, Yonglun Zeng, and Liwen Jiang, “COPII Paralogs in Plants: Functional Redundancy or Diversity?,” Trends in Plant Science, 2016. View at Publisher · View at Google Scholar
  • Yucel Kocyigit, “Heart sound signal classification using fast independent component analysis,” Turkish Journal Of Electrical Engineering And Computer Sciences, vol. 24, no. 4, pp. 2949–2960, 2016. View at Publisher · View at Google Scholar
  • Zena M. Hira, and Duncan F. Gillies, “A Review of Feature Selection and Feature Extraction Methods Applied on Microarray Data,” Advances in Bioinformatics, vol. 2015, pp. 1–13, 2015. View at Publisher · View at Google Scholar
  • Taegun Kwon, J. Alan Sparks, Jin Nakashima, Stacy N. Allen, Yuhong Tang, and Elison B. Blancaflor, “Transcriptional Response Of Arabidopsis Seedlings During Spaceflight Reveals Peroxidase And Cell Wall Remodeling Genes Associated With Root Hair Devel,” American Journal Of Botany, vol. 102, no. 1, pp. 21–35, 2015. View at Publisher · View at Google Scholar
  • Mariana Moysés-Oliveira, Roberta Santos Guilherme, Vera Ayres Meloni, Adriana Di Battista, Claudia Berlim de Mello, Silvia Bragagnolo, Danilo Moretti-Ferreira, Nadezda Kosyakova, Thomas Liehr, Gianna Maria Carvalheira, and Maria Isabel Melaragno, “X-linked intellectual disability related genes disrupted by balanced X-autosome translocations,” American Journal of Medical Genetics Part B: Neuropsychiatric Genetics, 2015. View at Publisher · View at Google Scholar
  • E. Sobieszczuk-Nowicka, A. Zmienko, A. Samelak-Czajka, M. Łuczak, M. Pietrowska-Borek, R. Iorio, S. Del Duca, M. Figlerowicz, and J. Legocka, “Dark-induced senescence of barley leaves involves activation of plastid transglutaminases,” Amino Acids, 2015. View at Publisher · View at Google Scholar
  • Xiaojun Pu, Xin Lv, Tinghong Tan, Faqiong Fu, Gongwei Qin, and Honghui Lin, “Roles of mitochondrial energy dissipation systems in plant development and acclimation to stress,” Annals of Botany, pp. mcv063, 2015. View at Publisher · View at Google Scholar
  • Qihua Ling, and Paul Jarvis, “Functions of plastid protein import and the ubiquitin-proteasome system in plastid development,” Biochimica et Biophysica Acta (BBA) - Bioenergetics, 2015. View at Publisher · View at Google Scholar
  • Jozef Nahalka, Eva Hrabarova, and Klaudia Talafova, “Protein-RNA and protein-glycan recognitions in light of amino acid codes,” Biochimica et Biophysica Acta (BBA) - General Subjects, 2015. View at Publisher · View at Google Scholar
  • Larissa Balabanova, Vasily Golotin, Anna Podvolotskaya, and Valery Rasskazov, “Genetically modified proteins: functional improvement and chimeragenesis,” Bioengineered, pp. 00–00, 2015. View at Publisher · View at Google Scholar
  • Rainer Waadt, Po-Kai Hsu, and Julian I. Schroeder, “Abscisic acid and other plant hormones: Methods to visualize distribution and signaling,” BioEssays, vol. 37, no. 12, pp. 1338–1349, 2015. View at Publisher · View at Google Scholar
  • Tae-Hyuk Ahn, Juanjuan Chai, and Chongle Pan, “Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance,” Bioinformatics, vol. 31, no. 2, pp. 170–177, 2015. View at Publisher · View at Google Scholar
  • Jimmy Ka Ho Chiu, and Yi-Ping Phoebe Chen, “Pairwise RNA secondary structure alignment with conserved stem pattern,” Bioinformatics, vol. 31, no. 24, pp. 3914–3921, 2015. View at Publisher · View at Google Scholar
  • Agne Antanaviciute, Christopher M. Watson, Sally M. Harrison, Carolina Lascelles, Laura Crinnion, Alexander F. Markham, David T. Bonthron, and Ian M. Carr, “OVA: integrating molecular and physical phenotype data from multiple biomedical domain ontologies with variant filtering for enhanced variant prioriti,” Bioinformatics, vol. 31, no. 23, pp. 3822–3829, 2015. View at Publisher · View at Google Scholar
  • Yusuke Komiyama, Masaki Banno, Kokoro Ueki, Gul Saad, and Kentaro Shimizu, “Automatic generation of bioinformatics tools for predicting protein–ligand binding sites,” Bioinformatics, vol. 32, no. 6, pp. 901–907, 2015. View at Publisher · View at Google Scholar
  • Jeremy Hyrkas, Sophie Clayton, Francois Ribalet, Daniel Halperin, E. Virginia Armbrust, and Bill Howe, “Scalable clustering algorithms for continuous environmental flow cytometry,” Bioinformatics, vol. 32, no. 3, pp. 417–423, 2015. View at Publisher · View at Google Scholar
  • Yu-Pin Lin, Dongpo Deng, Wei-Chih Lin, Rob Lemmens, Neville D. Crossman, Klaus Henle, and Dirk S. Schmeller, “Uncertainty analysis of crowd-sourced and professionally collected field data used in species distribution models of Taiwanese moths,” Biological Conservation, vol. 181, pp. 102–110, 2015. View at Publisher · View at Google Scholar
  • Tilahun Melak, and Sunita Gakkhar, “ Comparative Genome and Network Centrality Analysis to Identify Drug Targets of Mycobacterium tuberculosis H37Rv ,” BioMed Research International, vol. 2015, pp. 1–10, 2015. View at Publisher · View at Google Scholar
  • Shuang Leng, Ru San Tan, Kevin Tshun Chuan Chai, Chao Wang, Dhanjoo Ghista, and Liang Zhong, “The electronic stethoscope,” BioMedical Engineering OnLine, vol. 14, no. 1, 2015. View at Publisher · View at Google Scholar
  • Xiangyang Li, Jing Liu, Xia Yang, Yan Ding, Jian Wu, Deyu Hu, and Baoan Song, “Studies of Binding Interactions between Dufulin and Southern Rice Black-Streaked Dwarf Virus P9-1,” Bioorganic & Medicinal Chemistry, 2015. View at Publisher · View at Google Scholar
  • Lin Lin, Cliburn Chan, and Mike West, “Discriminative variable subsets in Bayesian classification with mixture models, with application in flow cytometry studies,” Biostatistics, pp. kxv021, 2015. View at Publisher · View at Google Scholar
  • Jonathan R Karr, Harendra Guturu, Edward Y Chen, Stuart L Blair, Jonathan M Irish, Nikesh Kotecha, and Markus W Covert, “NetworkPainter: dynamic intracellular pathway animation in Cytobank,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Felix Schönenberger, Anja Deutzmann, Elisa Ferrando-May, and Dorit Merhof, “Discrimination of cell cycle phases in PCNA-immunolabeled cells,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Ying Wang, Haiyan Hu, and Xiaoman Li, “MBBC: an efficient approach for metagenomic binning based on clustering,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Raluca Uricaru, Célia Michotey, Hélène Chiapello, and Eric Rivals, “YOC, A new strategy for pairwise alignment of collinear genomes,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Michael A. Peabody, Thea Van Rossum, Raymond Lo, and Fiona S. L. Brinkman, “Evaluation of shotgun metagenomics sequence classification methods using in silico and in vitro simulated communities,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Kai Hakala, Sofie Van Landeghem, Tapio Salakoski, Yves Van de Peer, and Filip Ginter, “Application of the EVEX resource to event extraction and network construction: Shared Task entry and result analysis,” Bmc Bioinformatics, vol. 16, 2015. View at Publisher · View at Google Scholar
  • Tianmin Wang, Hiroshi Mori, Chong Zhang, Ken Kurokawa, Xin-Hui Xing, and Takuji Yamada, “DomSign: a top-down annotation pipeline to enlarge enzyme space in the protein universe,” BMC Bioinformatics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Izza Nasrullah, Azeem M. Butt, Shifa Tahir, Muhammad Idrees, and Yigang Tong, “Genomic analysis of codon usage shows influence of mutation pressure, natural selection, and host features on Marburg virus evolution,” Bmc Evolutionary Biology, vol. 15, 2015. View at Publisher · View at Google Scholar
  • Jacob Porter, Ming-an Sun, Hehuang Xie, and Liqing Zhang, “Investigating bisulfite short-read mapping failure with hairpin bisulfite sequencing data,” Bmc Genomics, vol. 16, 2015. View at Publisher · View at Google Scholar
  • Dayong Li, Fuyou Fu, Huijuan Zhang, and Fengming Song, “Genome-wide systematic characterization of the bZIP transcriptional factor family in tomato (Solanum lycopersicum L.),” BMC Genomics, vol. 16, no. 1, 2015. View at Publisher · View at Google Scholar
  • Jong-Hun Lee, Sung-Joon Park, and Nakai Kenta, “An integrative approach for efficient analysis of whole genome bisulfite sequencing data,” Bmc Genomics, vol. 16, 2015. View at Publisher · View at Google Scholar
  • Giacomo Diaz, Fausto Zamboni, Ashley Tice, and Patrizia Farci, “Integrated ordination of miRNA and mRNA expression profiles,” Bmc Genomics, vol. 16, 2015. View at Publisher · View at Google Scholar
  • Juliana Nogueira Brasil, Luiz Mors Cabral, Nubia B. Eloy, Luiza M. F. Primo, Ito Liberato Barroso-Neto, Letícia P. Perdigão Grangeiro, Nathalie Gonzalez, Dirk Inzé, Paulo C. G. Ferreira, and Adriana S. Hemerly, “AIP1 is a novel Agenet/Tudor domain protein from Arabidopsis that interacts with regulators of DNA replication, transcription and chromatin remodeling,” BMC Plant Biology, vol. 15, no. 1, 2015. View at Publisher · View at Google Scholar
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  • Tara Kiran, Alexander Kopp, Rahim Moineddin, and Richard H. Glazier, “Longitudinal evaluation of physician payment reform and team-based care for chronic disease management and prevention,” Canadian Medical Association Journal, vol. 187, no. 17, pp. E494–E502, 2015. View at Publisher · View at Google Scholar
  • Andrija Finka, Vishal Sood, Manfredo Quadroni, Paolo De Los Rios, and Pierre Goloubinoff, “Quantitative proteomics of heat-treated human cells show an across-the-board mild depletion of housekeeping proteins to massively accumulate few HSPs,” Cell Stress and Chaperones, 2015. View at Publisher · View at Google Scholar
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  • Hamid Babamoradi, José Manuel Amigo, Frans van den Berg, Morten Rønn Petersen, Nana Satake, and Gry Boe-Hansen, “Quality assessment of boar semen by multivariate analysis of flow cytometric data,” Chemometrics and Intelligent Laboratory Systems, vol. 142, pp. 219–230, 2015. View at Publisher · View at Google Scholar
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  • Ertugrul Filiz, Ibrahim Ilker Ozyigit, and Recep Vatansever, “Genome-wide identification of galactinol synthase (GolS) genes in Solanum lycopersicum and Brachypodium distachyon,” Computational Biology and Chemistry, vol. 58, pp. 149–157, 2015. View at Publisher · View at Google Scholar
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