| Chromosome | Gene | SNPs | Population | OR¹ with LN | References |
| 6p21 | HLA region | DRB1*0301 and several other Alleles. | European, Several Asian, African American, mixed European-Amerindian, and Latin American. | 2.4 | [29, 34–37] |
| 7q32 | IRF5 | 5bp promoter indel, rs2004640, rs2070197, 10954213 rs10954213 rs 729302 | European, several Asian, mixed European-Amerindian, African American, Latin american. | 1.6 | [23, 38–42] |
| 2q32 | STAT4 | rs7574865, rs3821236, rs7582694 | European, mixed European-Amerindian, several Asian, African-American | 1.5 | [23, 38, 40, 43, 44] |
| 6q23 | TNFAIP3 | rs5029939 rs223096 rs223096 | European, Asian, African American | 2.0 | [23, 38, 40, 45–48] |
| 16p11 | ITGAM | rs9888739, rs1143679, rs4548893 | European, mixed European-Amerindian, Asian, African American, Latin Americans | 1.6 | [30, 38–40, 46, 49, 50] |
| 4q24 | BANK1 | rs10516487 rs1726654 rs3733197 rs1051647 rs10516483 | European, European-Amerindian, Asian, Caucasian | 1.2 | [38, 46, 51–53] |
| 1p13 | PTPN22 | rs2476601 | European, Latin Americans | 1.4 | [23, 54] |
| 8p23 | BLK | rs13277113, rs2736340 rs2248932 | European, several Asian | 1.3 | [23, 38–40, 46, 55, 56] |
| 2q37 | PDCD (CD279) | PD1.3A | European, European-Amerindian, Chinese, Latin Americans | 1.2 | [57] |
| 1q25 | TNFSF4 | Risk haplotype; rs3850641 | European, Asian | 1.4 | [23, 38, 40, 46, 52, 58] |
| 18q22.3 | CD226 | rs763361 rs727088 | European, European-Amerindian, Asian | NA² | [59, 60] |
| 1q21–23 | FCGR2A | ARG131HIS | European, European-Amerindian, African American | 2.2 | [23, 39, 40] |
| 19p13.2 | TYK2 | rs280519 rs2304256 rs12720270 | European | 1.2 | [40, 42] |
| 3p21.3 | TREX1 | rs72556554 | European, Asian, Hispanic, African | 25 | [61, 62] |
| Xq28 | MECP2-IRAK1 | rs2269368 rs17435 rs3027933 rs1734791 | European, Chinese, Korean, European-Amerindian (Mexican) | 1.4 | [40, 63–65] |
| 3p14.3 | PXK | rs6445975 rs2176082 | European | 1.2 | [23, 40] |
| 2q24 | IFIH1 | rs1990760 | European | NA² | [40] |
| 11p15.5 | KIAA1542 (PHRF1) | rs4963128 | European | NA² | [23] |
| 8p23.1 | XKR6 | rs6985109 | European | NA² | [23] |
| 6q21 | ATG5-PRMD1 | rs6568431, rs2245214 rs548234 | European, Chinese | NA² | [23, 40, 66] |
| 22q11.2 | UBE2L3 | s5754217 | European, Chinese | 1.2 | [40, 45, 67] |
| 5q33.3 | PTTG1 | rs2431099 | European | 1.2 | [40, 45, 67] |
| 6p21 | UHRF1BP1 | rs11755393 | European | NA² | [40, 67] |
| 5q32 | TNIP1 | rs7708392 | European, Chinese, Thai, Japanese. | 1.3 | [38, 40, 67, 68] |
| 7p15.2 | JAZF1 | rs849142 | European | NA² | [40, 67] |
| 7p21.3 | ICA1 | rs10156091 | European | 1.2 | [23, 67] |
| 1q24 | IL10 | rs3024505 | European | NA² | [40, 67] |
| 1q25.3 | NMNAT2 | rs2022013 | European, Chinese | 1.1 | [23, 38] |
| 11q23.3 | ETS1 | rs6590330 | Chinese, Thai | NA² | [38, 46] |
| 10q11.23 | WDFY4 | rs877819 | Chinese, Thai | NA² | [38, 46] |
| 7p12.2 | IKZF1 | rs4917014 | Chinese | 0.7 | [38] |
| 12q24.32 | SLC15A4 | rs10847697 rs1385374 | Chinese | 1.31 | [38] |
| 2p22.3 | RASGRP3 | rs13385731 | Chinese | 0.64 | [38] |
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