Research Article
Prediction of Ubiquitination Sites Using UbiNets
Table 4
Classifier performance on dataset 2.
| Models | 10-run average AUC | 10-run average accuracy | 10-run model averaging AUC score |
| ub_v1 | 0.69030 | 0.64450 | 0.69130 | ub_deeper | 0.68940 | 0.64410 | 0.69030 | ub_deeper_x2 | 0.68810 | 0.64150 | 0.68888 | Dense_residual_v2 | 0.69230 | 0.64430 | 0.69340 | 50x2_mlp_elu | 0.68660 | 0.63830 | 0.68700 | 100x2_mlp_elu | 0.68640 | 0.63850 | 0.68700 | 50x2_mlp_relu | 0.68960 | 0.64360 | 0.69070 | 100x2_mlp_relu | 0.68940 | 0.64360 | 0.69070 | Random forest, 100 estimators | 0.67425 | 0.63075 | 0.68312 | Random forest, 200 estimators | 0.67773 | 0.63185 | 0.68336 | gbm, 100 estimators | 0.68818 | 0.63922 | 0.69269 |
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