Sequence, Structure, and Binding Analysis of Cyclodextrinase (TK1770) from T. kodakarensis (KOD1) Using an In Silico Approach

Table 1

List of the sequences used for alignment and phylogenetics.

Enzyme	Organism	Abbreviation	A.A	Seq. similarity to Tk1770	UniProt ID
Cyclomaltodextrinase	T. kodakarensis	Tk1770 CDase	656	100%	Q5JJ59
Cyclomaltodextrinase	Thermococcus sp. (strain CGMCC)	THES4 CDase	637	60%	G0HJP6
Maltogenic -amylase	T. gammatolerans	THEGJ MAse	638	59%	C5A4D9
Cyclomaltodextrinase	T. cleftensis	THERCLF CDase	644	59%	I3ZTQ5
Cyclomaltodextrinase	T. onnurineus	THEON CDase	652	59%	B6YV58
Cyclomaltodextrinase	Pyrococcus yayanosii	PYRYC CDase	656	57%	F8AHJ5
Neopullulanase	Pyrococcus furiosus	PYRFU NPase	645	56%	Q8TZP8
Cyclomaltodextrinase	T. paralvinella	THERPA CDase	654	56%	W0I4Q4
Neopullulanase	T. litoralis	THELN NPase	655	55%	H3ZKI8
Cyclomaltodextrinase	Thermococcus sp. B1001	THERSP CDase	660	54%	Q9HHC8
α-amylase	T. pendens	THEPD -amylase	644	52%	A1S075
α-amylase	Staphylothermus marinus	STAMF -amylase	696	28%	A3DM60
Cyclomaltodextrinase	Geobacillus sp. G1w1	GBACI CDase	587	32%	A0A093UHG3
Cyclomaltodextrinase	Paenibacillus wynnii	PBACI CDase	581	31%	A0A098M8Z8
α-cyclomaltodextrinase	Bacillus mycoides	BACMY -CDase	586	30%	C3APY4
Neopullulanase	G. stearothermophilus	GEOSE NPase	588	31%	Q9AIV2
Cyclomaltodextrinase	Bacillus indicus	BACIIN CDase	589	29%	A0A084GIJ0

A.A means amino acids.