Research Article
Chemical Exposure Generates DNA Copy Number Variants and Impacts Gene Expression
Table 4
CNVs generated by Ara-C exposure.
| Experiment | Concentration (µM) | Chromosome | Start (bp) | End (bp) | Length (kb) | Segmentation mean | Overlap with CNVEsa |
| 1 | 0.1 | 6 | 51918902 | 51957898 | 39.0 | −0.443 | No | 1 | 1 | 4 | 41297060 | 41404074 | 107.0 | −0.298 | Yes | 1 | 1 | 19 | 3146476 | 3308498 | 162.0 | −0.206 | Yes | 2 | 1 | 4 | 6479244 | 7984418 | 1505.2 | 0.104 | Yes | 2 | 1 | 5 | 28310743 | 28556303 | 245.6 | 0.158 | No | 2 | 1 | 5 | 32149703 | 32834420 | 684.7 | 0.144 | Yes | 2 | 1 | 5 | 37513893 | 38141429 | 627.5 | 0.117 | No | 2 | 1 | 6 | 33587936 | 33807346 | 219.4 | 0.196 | No | 2 | 1 | 6 | 49575981 | 50700812 | 1124.8 | 0.126 | No | 2 | 1 | 8 | 46328539 | 46502625 | 174.1 | −0.237 | Yes | 2 | 1 | 9 | 50187567 | 50306820 | 119.3 | 0.460 | No | 2 | 1 | 12 | 11689110 | 12180785 | 491.7 | 0.173 | Yes | 2 | 1 | 14 | 16605821 | 16765982 | 160.2 | 0.473 | Yes | 2 | 1 | 17 | 39893636 | 39923656 | 30.0 | 0.455 | No | 2 | 1 | 19 | 37183601 | 37212491 | 28.9 | 0.559 | No | 2 | 1 | 20 | 3298313 | 3486787 | 188.5 | 0.226 | No | 2 | 1 | 21 | 8953651 | 9198587 | 244.9 | −0.194 | Yes | 2 | 1 | 23 | 3153298 | 3185448 | 32.2 | 0.374 | No |
|
|
CNVEs as called in AB strain zebrafish in [22].
|