A Scaffold Analysis Tool Using Mate-Pair Information in Genome Sequencing

Figure 3

Estimation of the gap size between contigs when 𝑏 has direction 𝑈 and 𝑔 has direction 𝐶. The gap size between 𝐶₁ and 𝐶₂ can be calculated as mate₋pairsize−{(𝐶₁⋅length−𝑃_𝑠(𝑏))+𝑃_𝑒(𝑔)}.