A Scaffold Analysis Tool Using Mate-Pair Information in Genome Sequencing

Table 1

Mate-pair information in real test datasets. The proportion of mate-pair reads for V. vulnificus is about double that for M. succiniciproducens.

Genome	Genome length	Fold	Number of reads	Number of mate-pairs	Proportion of mate-pair reads relative to number of reads
M. succiniciproducens	2.3 Mbp	13.2	about 25,000^*	275	2.2%
V. vulnificus	5.1 Mbp	11.7	76,971	1,781	4.5%

^*The numbers of reads for 4 versions of M. succiniciproducens show slight variation.