A Scaffold Analysis Tool Using Mate-Pair Information in Genome Sequencing

Table 2

Real test datasets. Four datasets for the M. succiniciproducens genome and one for the V. vulnificus genome were tested with ConPath. MP: mate-pair, MPIC: mate-pair in the same contigs.

Data name	Number of contigs	Number of MPs	Number of MPICs	Average size of MP(fosmid)s
MH1	98	238	72	37,673 bp
MH2	86	240	115	38,102 bp
MH3	85	240	120	38,157 bp
MH4	112	240	108	37,917 bp
VV	334	1,220	454	33,024 bp