Research Article
A Scaffold Analysis Tool Using Mate-Pair Information in Genome Sequencing
Table 3
Number of reported errors in scaffold construction for 5 dataset.
| Data name | | Errors* | 1 | 2 | 3 | 4 |
| MH1 | Self Collision | 0 | 0 | 0 | 0 | Gap size | 3 | 3 | 3 | 0 | Overlap | 22 | 2 | 0 | 2 | MH2 | Self collision | 2 | 2 | 2 | 2 | Gap size | 2 | 2 | 2 | 2 | Overlap | 20 | 2 | 2 | 0 | MH3 | Self collision | 0 | 0 | 0 | 0 | Gap size | 5 | 0 | 0 | 0 | Overlap | 18 | 0 | 0 | 0 | MH4 | Self collision | 0 | 0 | 0 | 0 | Gap size | 0 | 0 | 0 | 0 | Overlap | 0 | 0 | 0 | 0 | VV | Self collision | 16 | 16 | 10 | 7 | Gap size | 65 | 7 | 3 | 2 | Overlap | 85 | 24 | 0 | 4 |
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* Mate-pair
size errors were excluded because these errors do not depend on .
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