|
Tool | Website | Type | Class | Refs |
|
ANNPRED | http://www.imtech.res.in/raghava/nhlapred/neural.html | ANN | I | [234] |
Bimas | http://www-bimas.cit.nih.gov/molbio/hla_bind/ | QM | I | [51] |
EpiJen | http://www.ddg-pharmfac.net/epijen/EpiJen/EpiJen.htm | Multi-step algorithm | I | [235] |
EPIMHC | http://imed.med.ucm.es/epimhc/ | user made Profiles | I, II | [236] |
EpiMatrix | http://www.epivax.com/ | Matrix-based and pocket profile | I, II | [237] |
HLABIND | http://atom.research.microsoft.com/hlabinding/hlabinding.aspx | Adaptive Double Threading | I | [238] |
IEDB | http://tools.immuneepitope.org/analyze/html/mhc_binding.html | ARB-QM, SMM-QM, ANN-regression | I | [239] |
KISS | http://cbio.ensmp.fr/kiss/ | SVM | I | [240] |
MHC2PRED | http://www.imtech.res.in/raghava/mhc2pred/ | SVM | II | [241] |
MHC Pred | http://www.jenner.ac.uk/MHCPred | Partial least-squares-based multivariate statistical method | I, II | [242] |
MULTIPRED | http://antigen.i2r.a-star.edu.sg/multipred/ | ANN, pHMM | I, II | [243] |
MOTIF_SCAN | http://www.hiv.lanl.gov/content/immunology/motif_scan/motif_scan | Sequence Motifs | I, II | ā |
NetCTL | http://www.cbs.dtu.dk/services/NetCTL/ | Multi-step algorithm | I, CTL | [60] |
NetCTLSpan | http://www.cbs.dtu.dk/services/NetCTLpan/ | Multi-step algorithm | I, CTL | [62] |
NetMHC | http://www.cbs.dtu.dk/services/NetMHC/ | ANN | I | [244] |
netMHCII | http://www.cbs.dtu.dk/services/NetMHCII/ | SMM-QM | II | [245] |
netMHCpan | http://www.cbs.dtu.dk/services/NetMHCpan/ | ANN-regression | I | [246] |
netMHCIIpan | http://www.cbs.dtu.dk/services/NetMHCIIpan/ | ANN-regression | II | [247] |
PEPVAC | http://imed.med.ucm.es/PEPVAC/ | Profiles or PSSM | I | [248] |
PREDEP | http://margalit.huji.ac.il/Teppred/mhc-bind/index.html | Threading | I | [249] |
POPI | http://iclab.life.nctu.edu.tw/POPI/ | SVM | I, II | [250] |
PROPREDI | http://www.imtech.res.in/raghava/propred1/ | QM | I | [251] |
PROPRED | http://www.imtech.res.in/raghava/propred/ | QM | II | [252] |
RANKPEP | http://imed.med.ucm.es/Tools/rankpep.html | Profiles or PSSM | I, II | [253] |
SVMHC | http://abi.inf.uni-tuebingen.de/SVMHC | SVM | I, II | [254] |
SVRMHC | http://svrmhc.biolead.org/ | SVM-regression | I, II | [255] |
SYFPEITHI | http://www.syfpeithi.de/ | Motif matrices | I, II | [50] |
TEPITOPE | http://www.vaccinome.com/ | QM | II | [256] |
Vaxign | http://www.violinet.org/vaxign/ | PSSM | I, II | [110] |
|