BioMed Research International

Research Article

Dynamic Metabolic Flux Analysis Demonstrated on Cultures Where the Limiting Substrate Is Changed from Carbon to Nitrogen and Vice Versa

Table 2

List of metabolites used in the metabolic model.
Metabolite Molecular formula Full name
2PG C 3 H 7 O 7 P 2-phophoglycerate
3PG C 3 H 7 O 7 P 3-phophoglycerate
6PG C 6 H 1 3 O 1 0 P 6-phosphogluconate
6PGL C 6 H 1 1 O 9 P 6-phosphogluconolactone
Ac C 2 H 4 O 2 Acetate
AcACP C 2 H 3 O P e p t Acetyl ACP
AcCoA C 2 3 H 3 4 O 1 7 N 7 P 3 S Acetyl CoA
ACP H P e p t Acyl carrier protein
ADP C 1 0 H 1 5 O 1 0 N 5 P 2 Adenosine diphosphate
ADPHEP C 1 7 H 2 7 O 1 6 N 5 P 2 ADP-Mannoheptose
AICAR C 9 H 1 5 O 8 N 4 P Amino imidazole carboxamide ribonucleotide
aKGA C 5 H 6 O 5 Alpha ketoglutaric acid
aKIV C 5 H 8 O 3 Alpha-keto-isovalerate
Ala C 3 H 7 O 2 N Alanine
AMP C 1 0 H 1 4 O 7 N 5 P Adenosine monophosphate
Ar5P C 5 H 1 1 O 8 P Arabinose-5-phosphate
Arg C 6 H 1 4 O 2 N 4 Arginine
Asn C 4 H 8 O 3 N 2 Aspartate
Asp C 4 H 7 O 4 N Asparagine
AspSA C 4 H 7 O 3 N Aspartate semialdehyde
ATP C 1 0 H 1 6 O 1 3 N 5 P 3 Adenosine triphosphate
Biom C H 1 . 6 3 O 0 . 3 9 2 N 0 . 2 4 4 P 0 . 0 2 1 S 0 . 0 0 5 6 5 Biomass
BPG C 3 H 8 O 1 0 P 2 1-3-biphosphoglycerate
C120ACP C 1 2 H 2 3 O P e p t
C140ACP C 1 4 H 2 7 O P e p t
C160ACP C 1 6 H 3 1 O P e p t
C181ACP C 1 8 H 3 3 O P e p t
CarP C H 4 O 5 N P Carbamoyl phosphate
CDP C 9 H 1 5 O 1 1 N 3 P 2 Citidine diphosphate
CDPDGo C 4 6 H 8 3 O 1 5 N 3 P 2 CDP-diacylglycerol
CDPEthAn C 1 1 H 2 0 O 1 1 N 4 P 2 CDP-ethanolamine
Chor C 1 0 H 1 0 O 6 Chorismate
Cit C 6 H 8 O 7 cisaconitate
CL C 7 7 H 1 4 4 O 1 6 P 2 Cardiolipin
CMP C 9 H 1 4 O 8 N 3 P Citidine monophosphate
CMPKDO C 1 7 H 2 6 O 1 5 N 3 P CMP-2-keto-3-deoxyoctanoate
C O 2 C O 2 Carbon dioxide
CoA C 2 1 H 3 2 O 1 6 N 7 P 3 S Coenzyme A
CTP C 9 H 1 6 O 1 4 N 3 P 3 Citidine triphosphate
Cys C 3 H 7 O 2 N S Cysteine
dADP C 1 0 H 1 5 O 9 N 5 P 2 deoxy ADP
Dahp C 7 H 1 3 O 1 0 P Deoxy arabino heptulosonate
dATP C 1 0 H 1 6 O 1 2 N 5 P 3 deoxy ATP
dCDP C 9 H 1 5 O 1 0 N 3 P 2 deoxy CDP
dCTP C 9 H 1 6 O 1 3 N 3 P 3 deoxy CTP
dGDP C 1 0 H 1 5 O 1 0 N 5 P 2 deoxy GDP
DGo C 3 7 H 7 0 O 5 Diacyl glycerol
dGTP C 1 0 H 1 6 O 1 3 N 5 P 3 deoxy GTP
DHAP C 3 H 7 O 6 P Dihydroxyaceton phosphate
DHF C 1 9 H 2 1 O 6 N 7 Dihydrofolate
Dhq C 7 H 1 0 O 6 Dehydroquinate
Dhs C 7 H 8 O 5 Dehydroshikimate
DNA C 9 . 7 5 H 1 4 . 2 O 7 N 3 . 7 5 P DNA composition
dTDP C 1 0 H 1 6 O 1 1 N 2 P 2 deoxy TDP
dTMP C 1 0 H 1 5 O 8 N 2 P deoxy TMP
dTTP C 1 0 H 1 7 O 1 4 N 2 P 3 deoxy TTP
dUDP C 9 H 1 4 O 1 1 N 2 P 2 deoxy UDP
dUMP C 9 H 1 3 O 8 N 2 P deoxy UMP
dUTP C 9 H 1 5 O 1 4 N 2 P 3 deoxy UTP
E4P C 4 H 9 O 7 P Erythrose-4-phosphate
F6P C 6 H 1 3 O 9 P Fructose-6-phosphate
FA C H 2 O 2 Formic Acid
FAD C 2 7 H 3 3 O 1 5 N 9 P 2 Flavine adeninen dinucleotide
FADH2 C 2 7 H 3 5 O 1 5 N 9 P 2
FBP C 6 H 1 4 O 1 2 P 2 Fructose-1-6-biphosphate
FTHF C 2 0 H 2 3 O 7 N 7 Formyl tetrahydrofolate
Fum C 4 H 4 O 4 Fumarate
G1P C 6 H 1 3 O 9 P Glucose-1-phosphate
G3P C 3 H 7 O 6 P Glyceraldehyde-3-phosphate
G6P C 6 H 1 3 O 9 P Glucose-6-phosphate
GA1P C 6 H 1 4 O 8 N P D-glucosamine-6-phosphate
GA6P C 6 H 1 4 O 8 N P Glucose-6-phosphate
GDP C 1 0 H 1 5 O 1 1 N 5 P 2 Guanosine diphosphate
GLC C 6 H 1 2 O 6 Glucose
Glcg C 6 H 1 0 O 5 Glycogen
Gln C 5 H 1 0 O 3 N 2 Glutamine
Glu C 5 H 9 O 4 N Glutamate
Gly C 2 H 5 O 2 N Glycine
GMP C 1 0 H 1 4 O 8 N 5 P Guanosine monophosphate
Go3P C 3 H 9 O 6 P Glycerol-3-phosphate
GTP C 1 0 H 1 6 O 1 4 N 5 P 3 Guanosine triphosphate
H H + Hydrogene
H 2 C O 3 C H 2 O 3 Bicarbonate
H 2 O H 2 O Water
H 2 O 2 H 2 O 2
H 2 S H 2 S Hydrogene sulde
H 2 S O 4 H 2 O 4 S Sulfuric acid
His C 6 H 9 O 2 N 3 Histidine
HSer C 4 H 9 O 3 N Homoserine
iCit C 6 H 8 O 7 Isocitrat
Ile C 6 H 1 3 O 2 N Isoleucine
IMP C 1 0 H 1 3 O 8 N 4 P Inosine monophosphate
Lac C 3 H 6 O 3 Lactate
Leu C 6 H 1 3 O 2 N Leucine
Lipa C 1 1 0 H 1 9 6 O 3 2 N 2 P 2 Lipid A
Lipid C 4 0 . 2 H 7 7 . 6 O 8 . 4 1 N 0 . 7 7 1 P 1 . 0 3 Lipid composition
Lps C 1 7 1 H 2 9 8 O 8 1 N 4 P 2 Lipo Poly saccharide
Lys C 6 H 1 4 O 2 N 2 Lysine
Mal C 4 H 6 O 5 Malate
MalACP C 3 H 3 O 3 P e p t Malonyl ACP
MalCoA C 2 4 H 3 4 O 1 9 N 7 P 3 S Malonyl CoA
MDAP C 7 H 1 4 O 4 N 2 Meso-diaminopimelate
Met C 5 H 1 1 O 2 N S Methionine
MeTHF C 2 0 H 2 3 O 6 N 7 Methylene tetrahydro folate
MTHF C 2 0 H 2 5 O 6 N 7 Methyl tetrahydrofolate
NAD C 2 1 H 2 8 O 1 4 N 7 P 2 + Nicotinamide adenine dinucleotide
NADH C 2 1 H 2 9 O 1 4 N 7 P 2
NADP C 2 1 H 2 8 O 1 7 N 7 P 3 + Nicotinamide adenine dinucleotide phosphate
NADPH C 2 1 H 2 9 O 1 7 N 7 P 3
N H 3 H 3 N Ammonia
O 2 O 2 Oxygen
OAA C 4 H 4 O 5 Oxaloacetate
Orn C 5 H 1 2 O 2 N 2 Ornithine
PA C 3 7 H 7 1 O 8 P Phosphatidyl acid
PAP C 1 0 H 1 5 O 1 0 N 5 P 2 Phospho adenosine phosphate
PEP C 3 H 5 O 6 P Phosphoenolpyruvate
Peptido C 3 5 H 5 3 O 1 6 N 7 Peptidoglycan
PEthAn C 3 9 H 7 6 O 8 N P Phosphatidyl ethanolamine
PG C 4 0 H 7 5 O 9 P Phosphatidyl glycerol
Phe C 9 H 1 1 O 2 N Phenylalanine
PiOH H 3 O 4 P Phosphate
PPiOH H 4 O 7 P 2 Pyrophosphate
Pro C 5 H 9 O 2 N Proline
Prot C 4 . 8 H 7 . 6 7 O 1 . 4 N 1 . 3 7 S 0 . 0 4 6 Protein composition
PRPP C 5 H 1 3 O 1 4 P 3 5-phospho-alpha-D-ribosyl-1-pyrophosphate
PSer C 4 0 H 7 6 O 1 0 N P Phosphatidyl Serine
Pyr C 3 H 4 O 3 Pyruvate
R5P C 5 H 1 1 O 8 P Ribose-5-phosphate
Rl5P C 5 H 1 1 O 8 P Ribulose-5-phosphate
RNA C 9 . 5 8 H 1 3 . 8 O 7 . 9 5 N 3 . 9 5 P RNA composition
S7P C 7 H 1 5 O 1 0 P Sedoheptulose-7-phosphate
Ser C 3 H 7 O 3 N Serine
Shi C 7 H 1 0 O 5 Shikimate
Shi3P C 7 H 1 1 O 8 P Shikimate-3-phosphate
Suc C 4 H 6 O 4 Succinate
SucCoA C 2 5 H 3 6 O 1 9 N 7 P 3 S Succinyl CoA
THF C 1 9 H 2 3 O 6 N 7 Tetrahydrofolate
Thiored P e p t Thioredoxin
Thiored H 2 H 2 P e p t Reduced thioredoxin
Thr C 4 H 9 O 3 N Threonine
Trp C 1 1 H 1 2 O 2 N 2 Tryptophan
Tyr C 9 H 1 1 O 3 N Tyrosine
UDP C 9 H 1 4 O 1 2 N 2 P 2 Uridine diphosphate
UDPGlc C 1 5 H 2 4 O 1 7 N 2 P 2 UDP glucose
UDPNAG C 1 7 H 2 7 O 1 7 N 3 P 2 UDP N-acetyl glucosamine
UMP C 9 H 1 3 O 9 N 2 P Uridine monophosphate
UTP C 9 H 1 5 O 1 5 N 2 P 3 Uridine triphosphate
Val C 5 H 1 1 O 2 N Valine
XMP C 1 0 H 1 3 O 9 N 4 P Xanthosine-5-phosphate
Xu5P C 5 H 1 1 O 8 P Xylulose-5-phosphate