BioMed Research International / 2010 / Article / Tab 4 / Research Article
Correctness of Protein Identifications of Bacillus subtilis Proteome with the Indication on Potential False Positive Peptides Supported by Predictions of Their Retention Times Table 4 Test peptides from proteins of Bacillus subtilis proteome, identified on the basis of one peptide with
𝑋
c
o
r
r
above 1.5.
Peptide sequence m/z Missed cleavages Charge
𝑋
c
o
r
r
l
o
g
S
u
m
(
𝑘
+
1
)
A
A
c
l
o
g
P
𝑡
𝑅
e
x
p
𝑡
𝑅
p
r
e
d
Dt R NIAEMVK 754.79 0 1 1.62 1.1042
−
2
.
4
3
14.25 16.15 1.90 INIMSAR 1463.68 0 1 1.87 1.1746
−
2
.
8
6
14.23 18.09 3.86 NLLFAAR 707.86 0 1 1.81 1.3307
−
1
.
1
2
14.27 24.44 10.17 LNSLDSR 896.11 0 1 1.64 1.1755
−
4
.
7
9
14.29 16.65 2.36 DIMSPSR 1380.53 0 1 1.53 1.0654
−
4
.
2
7
14.30 13.50 0.80 LALDLESKK 922.17 1 1 1.62 1.3216
−
2
.
7
3
18.01 22.92 4.91 IDIALESKK 1020.08 1 1 1.54 1.2931
−
2
.
7
7
18.04 21.97 3.93 SHTGKAAVLNR 524.07 1 1 1.52 1.2061
−
6
.
8
5
24.54 16.07 8.47 GHNPGQPEPLSGSK 718.86 0 2 3.54 1.2550
−
8
.
6
5
17.05 16.27 0.78 VVVSVNTDQDQAQAQSQDGED 868.09 0 2 4.73 1.4038
−
1
4
.
7
4
19.37 16.42 2.95 GNQVSENLQQAAR 694.78 0 2 2.03 1.2571
−
9
.
4
20.52 15.76 4.76 LIDKHKKYVYHRINK 920.72 4 2 2.60 1.5299
−
4
.
2
9
29.00 28.43 0.57 EAEELIPNVTTAAVK 1025.52 0 2 2.43 1.3889
−
6
.
3
7
29.18 22.31 6.87 ELQEKFLIPAVEQKK 1044.81 2 2 2.24 1.5292
−
3
.
6
2
29.27 28.92 0.35 QDIPIEARMNEIVHSLK 1098.25 1 2 2.15 1.5231
−
5
.
6
7
29.33 27.16 2.17 AAEMAVARQNEQKVKK 617.20 3 2 2.20 1.2894
−
7
.
1
6
29.44 18.51 10.93 EGTVIKELIGAGQLDEK 817.41 1 2 2.40 1.5147
−
5
.
7
4
29.49 26.84 2.65 EVMIEGVLSVLEGQAPK 731.84 0 2 2.38 1.5167
−
4
.
3
4
29.51 27.97 1.54 DRVFIAPVGGGPR 580.16 1 2 2.68 1.3967
−
3
.
6
4
29.82 24.64 5.18 SGETEDSTIADIAVATNAGQIK 865.45 0 2 3.33 1.5192
−
9
.
3
9
30.05 24.21 5.84 IDNLSYYIEQEYK 952.72 0 2 2.13 1.5361
−
4
.
6
3
30.89 28.37 2.52 SGSIESIDVSLTDLR 613.73 0 2 2.53 1.4873
−
6
.
4
9
33.05 25.39 7.66 LEIASEFGVNLGADTTSR 1481.93 0 2 4.30 1.5661
−
5
.
8
7
33.12 28.39 4.73 HSSDEEPFSALAFK 531.67 0 2 2.95 1.4894
−
5
.
3
4
33.16 26.33 6.83 AVLSPLFPTATEGGENMDSNLK 1146.78 0 2 4.62 1.6314
−
6
.
3
6
34.13 30.12 4.01 VCELQKVAVLNINDLANAVK 1078.27 1 2 2.00 1.5981
−
4
.
6
34.35 30.39 3.96 TEWRQERLNPLQRLTGR 1077.71 3 2 2.48 1.5870
−
8
.
4
1
34.47 27.13 7.34 GVSNNIIELINASGEPVIWK 1077.73 0 2 2.25 1.6913
−
4
.
4
2
34.49 33.52 0.97 LSLKSIIIGGRIPNYHK 955.65 2 2 2.06 1.6217
−
5
.
3
5
35.03 30.58 4.45 ANVPLDQIAVLSIGTGEAPTR 1062.20 0 2 4.11 1.5774
−
5
.
5
9
35.54 28.97 6.57 DQDISGEKATADQLLKDVK 1038.13 2 2 2.09 1.4968
−
8
.
5
6
35.61 24.12 11.49 LIDIVNPTPQTVDALMR 949.11 0 2 4.64 1.5453
−
4
.
5
1
36.18 28.76 7.42 AEELGAIIVDPSKTDDVVAEIAER 1271.40 1 2 2.49 1.6150
−
6
.
8
3
36.41 29.24 7.17 GGGFLIEDVTYDQMYTPEDFTDEHK 1455.04 0 2 2.46 1.7382
−
7
.
2
9
36.58 32.85 3.73 AIDSAVEELTFIAGQKPVVTR 1123.28 1 2 2.89 1.6162
−
5
.
2
9
37.19 30.45 6.74 TYNLSLDNGGDFIQIGSDGGLLPR 1262.37 0 2 3.54 1.7529
−
7
.
5
8
37.31 33.10 4.21 TIPLNITPYYASLMDPDNPR 1146.80 0 2 2.01 1.6343
−
5
.
1
3
37.49 31.15 6.34 IVPISEIPSDLEAIDIGTK 1006.15 0 2 2.95 1.6095
−
3
.
9
3
37.73 31.27 6.46 IQNGDPIAGLFDEFTQTVQR 1125.73 0 2 2.68 1.6493
−
5
.
7
42.90 31.20 11.70 KVKTINRQIKISIRAEDQAFYR 893.71 5 3 2.54 1.6664
−
7
.
1
9
33.22 30.62 2.60 SLEEGQEVSFEIVEGNRGPQASNVVKL 973.06 2 3 2.52 1.6909
−
8
.
4
7
34.44 30.43 4.01
