BioMed Research International / 2010 / Article / Tab 5 / Research Article
Correctness of Protein Identifications of Bacillus subtilis Proteome with the Indication on Potential False Positive Peptides Supported by Predictions of Their Retention Times Table 5 Test peptides from proteins of Bacillus subtilis proteome, identified on the basis of one peptide with
𝐗
c
o
r
r
below 1.5.
Peptide sequence m/z Missed cleavages Charge
𝑋
c
o
r
r
l
o
g
S
u
m
(
𝑘
+
1
)
A
A
c
l
o
g
P
𝑡
𝑅
e
x
p
𝑡
𝑅
p
r
e
d
Dt R RADGSINQHPQER 754.79 1 2 1.4014 1.2128
−
1
0
.
2
8
14.94 13.67 1.27 KGTDWNLYFWTAASYNAVIFVFVLV 1463.68 1 2 1.0082 1.9367
−
5
.
7
9
42.39 40.38 2.01 ALECFKEMTTKI 707.86 2 2 1.0212 1.4322
−
5
.
6
3
26.63 24.27 2.36 VKVIKPDP 896.11 2 1 0.9391 1.1301
−
1
.
6
3
15.64 17.59 1.95 AQLSEKKGADGYL 1380.53 2 1 1.1544 1.3902
−
5
.
2
6
26.46 23.20 3.26 TRLMGLILAVVAVGMIGAG 922.17 1 2 1.0633 1.6382
−
6
.
6
1
33.61 30.15 3.46 SDNNIDKTL 1020.08 1 1 1.2258 1.2125
−
8
.
5
4
18.87 14.98 3.89 EEKENWVL 524.07 1 2 0.9181 1.3569
−
5
.
1
26.26 22.25 4.01 SWIGLPAPIFAGIAAIFAIQP 718.86 0 3 1.2819 1.8072
−
3
.
1
3
33.64 38.24 4.60 LLGILTGFFMIGAKRP 868.09 2 2 0.9776 1.6883
−
3
.
3
2
39.42 34.27 5.15 ELSASMG 694.78 0 1 1.1685 1.0896
−
5
.
9
8
18.33 12.98 5.35 KHGVHIVAGSVAVRKNSDVYNTMYI 920.72 3 3 1.2386 1.6583
−
1
1
.
8
1
33.61 26.84 6.77 DGWKVCLGKVGSMDAHKVVAAIETASKKSG 1025.52 5 3 1.2037 1.7212
−
1
3
.
4
6
37.72 27.61 10.11 EYLDLLEKNVPYPAPSDLIFWSNEDY 1044.81 1 3 1.1465 1.8645
−
4
.
7
7
48.33 38.83 9.50 KAEDLLRKVGLFEKRNDY 1098.25 5 2 1.0209 1.6135
−
5
.
9
8
39.52 29.83 9.69 LLFKPNEERS 617.20 2 2 1.1289 1.3877
−
3
.
8
6
10.37 24.18 13.81 EVTPEIEAAAGKGFTI 817.41 1 2 1.0159 1.4795
−
9
.
5
1
9.03 22.84 13.81 NRVEYVKAEIQI 731.84 2 2 1.0301 1.3873
−
5
.
2
2
40.09 23.13 16.96 LEEFKKDLH 580.16 2 2 0.8629 1.3695
−
3
.
2
4
6.94 24.07 17.13 AGQHERLKEMNVTDT 865.45 2 2 1.0166 1.3300
−
8
.
4
7
37.37 18.82 18.55 TGALIVYTSADSVLQIAAHEEVVPLEE 952.72 0 3 1.1387 1.7286
−
5
.
6
9
52.12 33.76 18.36 KIDKSIFPGIQGGPLMH 613.73 2 3 1.0526 1.5877
−
4
.
1
1
12.03 30.43 18.40 QMLRMMMMQMGMKPSQKKINQMMK 1481.93 4 2 1.3223 1.6338
−
9
.
9
3
49.34 27.48 21.86 RILLSLFLS 531.67 1 2 0.9681 1.5406
−
3
.
0
2
8.19 29.74 21.55 LTELQVRHII 1222.46 1 1 1.3716 1.4101
−
5
.
6
4
48.06 23.55 24.51 EPIQSFFQID 1224.34 0 1 1.1369 1.4701
−
4
.
1
7
51.92 26.60 25.32 NRAVGFISFVI 1223.45 1 1 1.1616 1.5144
−
4
.
6
2
58.59 27.68 30.91 IHTLEHLLAFTI 1408.67 0 1 1.0082 1.5688
−
5
.
1
3
81.04 29.04 52.00 GQEQLIPPLIL 1221.47 0 1 1.3977 1.4715
−
4
.
7
9
81.34 26.17 55.17 PIITVAKEAWPTL 1439.72 1 1 0.9968 1.5364
−
6
.
3
4
83.17 27.08 56.09 IIGYLDQME 541.63 0 2 1.0583 1.3894
−
2
.
1
2
83.84 25.56 58.28 IGLLIFLP 886.16 0 1 1.2041 1.5192
1
.
1
7
93.97 32.24 61.73 IVLKY 635.82 1 1 0.9641 1.2298
0
.
9
1
86.20 22.73 63.47 GIIAAYG 664.77 0 1 1.0865 1.2361
−
0
.
4
3
89.29 21.92 67.37 PKCPV 543.70 1 1 0.934 0.7843
−
2
.
2
4
77.72 6.00 71.72 PQTPVP 638.74 0 1 1.1985 0.8503
−
2
.
8
3
80.37 7.68 72.69 LAAGISTI 745.89 0 1 1.1611 1.2704
−
5
.
2
4
92.62 19.36 73.26 IDFPTNITMD 1167.31 0 1 1.3316 1.3871
−
5
.
3
96.80 23.07 73.73 DGITDVL 732.80 0 1 1.0216 1.1875
−
6
.
2
93.5 15.96 77.54 HGGSLSAPAIH 1047.15 0 1 1.2372 1.2628
−
6
.
4
97.03 18.23 78.80
