Research Article
Global Egr1-miRNAs Binding Analysis in PMA-Induced K562 Cells Using ChIP-Seq
Table 1
Genomic features (especially intergenic region and intron region) and motif properties of the ChIP-Seq enriched regions associated with miRNA genes.
| | No. of peaks located in intergenic region (ratio) | No. of peaks located in intron region (ratio) | total peak no. | No. of peaks with canonical motif (ratio) |
| All peaks enriched | 7340 (50.2%) | 5460 (37.3%) | 14,636 | 6318 (43.2%) | Peaks associated with miRNA genes (187) | 95 (43.2%) | 90 (40.1%) | 220 | 135 (61.2%) | Peaks associated with the promoter of miRNA genes (124) | 64 (46.0%) | 67 (48.2%) | 139 | 94 (67.6%) | Peaks associated with pre miRNAs (125) | 60 (46.9%) | 46 (35.9%) | 128 | 74 (57.8%) |
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