Global Egr1-miRNAs Binding Analysis in PMA-Induced K562 Cells Using ChIP-Seq

Table 4

The list of miRNA promoters with both Egr1 motif and ChIP-Seq peak. mir_TSS_start and mir_TSS_end is the start and stop of the predicted promoters. score is the cumulative score for each predicted promoter. motif_num is the count of the Egr1 motifs in the promoter regions of miRNAs.

mir_name	mir_TSS_start	mir_TSS_end	score	strand	chr	reads_count	peak_summit	motif_num
hsa-mir-200b	1088265	1090140	10	+	chr1	11	1091461	2
hsa-mir-200b	1088265	1090140	10	+	chr1	10	1094077	2
hsa-mir-200b	1088265	1090140	10	+	chr1	9	1086834	2
hsa-mir-30e/30c-1; (cluster-hsa-mir-30a)	40929851	40930051	19	+	chr1	25	40930041	1
hsa-mir-92b	153429179	153434335	10	+	chr1	13	153430306	3
hsa-mir-92b	153429179	153434335	10	+	chr1	11	153428517	3
hsa-mir-146b	104184797	104186757	10	+	chr10	23	104185405	2
hsa-mir-132/212; (cluster-hsa-mir-132)	1899412	1901670	10	−	chr17	23	1900085	4
hsa-mir-132/212; (cluster-hsa-mir-132)	1899412	1901670	10	−	chr17	23	1903969	4
hsa-mir-10a	44014310	44014709	15	−	chr17	51	44010351	1
hsa-mir-10a	44014310	44014709	15	−	chr17	9	44014535	1
hsa-mir-142	53379405	53785839	10	−	chr17	14	53757151	45
hsa-mir-142	53379405	53785839	10	−	chr17	14	53516188	45
hsa-mir-142	53379405	53785839	10	−	chr17	13	53765628	45
hsa-mir-142	53379405	53785839	10	−	chr17	11	53760775	45
hsa-mir-142	53379405	53785839	10	−	chr17	11	53383253	45
hsa-mir-142	53379405	53785839	10	−	chr17	10	53740717	45
hsa-mir-142	53379405	53785839	10	−	chr17	10	53671689	45
hsa-mir-142	53379405	53785839	10	−	chr17	9	53739084	45
hsa-mir-142	53379405	53785839	10	−	chr17	9	53711312	45
hsa-mir-142	53379405	53785839	10	−	chr17	9	53747880	45
hsa-mir-24-2/27a/23a; (cluster-has-mir-23a)	13818427	13819944	1	−	chr19	10	13814707	2
hsa-mir-642	50863241	50863441	20	+	chr19	18	50863778	1
hsa-mir-99b/let-7e/125a; (cluster-has-mir-99b)	56883717	56886813	10	+	chr19	17	56886253	5
hsa-mir-99b/let-7e/125a; (cluster-has-mir-99b)	56883717	56886813	10	+	chr19	10	56884005	5
hsa-mir-149	241040800	241041000	9	+	chr2	10	241042627	1
hsa-mir-149	241043770	241044582	10	+	chr2	10	241042627	1
hsa-mir-124-3	61276703	61277978	9	+	chr20	33	61280947	2
hsa-mir-124-3	61276703	61277978	9	+	chr20	10	61274186	2
hsa-mir-124-3	61278418	61280978	10	+	chr20	33	61280947	3
hsa-mir-124-3	61278418	61280978	10	+	chr20	10	61274186	3
hsa-mir-185	18388530	18388730	20	+	chr22	38	18388406	1
hsa-mir-185	18388530	18388730	20	+	chr22	36	18384025	1
hsa-mir-185	18388530	18388730	20	+	chr22	10	18392254	1
hsa-mir-301b/130b; (cluster-hsa-mir-130b)	20335495	20337979	10	+	chr22	20	20338454	1
hsa-mir-301b/130b; (cluster-hsa-mir-130b)	20335495	20337979	10	+	chr22	19	20341434	1
hsa-mir-301b/130b; (cluster-hsa-mir-130b)	20335495	20337979	10	+	chr22	9	20332712	1
hsa-mir-301b/130b; (cluster-hsa-mir-130b)	20335495	20337979	10	+	chr22	9	20330784	1
hsa-mir-425/191; (cluster-hsa-mir-191)	49029742	49035883	10	−	chr3	11	49033588	3
hsa-mir-148a	25955148	25959801	10	−	chr7	12	25957595	2
hsa-mir-96/183; (cluster-hsa-mir-96)	129204548	129210298	10	−	chr7	23	129207821	7
hsa-mir-96/183; (cluster-hsa-mir-96)	129204548	129210298	10	−	chr7	9	129200022	7
hsa-mir-335	129919123	129919323	10	+	chr7	13	129919298	2
hsa-mir-596	1752393	1753192	10	+	chr8	13	1752487	1
hsa-mir-32	110921946	110922146	19	−	chr9	9	110922058	1
hsa-mir-455	115957951	115958151	20	+	chr9	14	115956609	1
hsa-mir-219-2	130194040	130195803	10	-	chr9	9	130196326	2