Construction, Characterization, and Preliminary BAC-End Sequence Analysis of a Bacterial Artificial Chromosome Library of the Tea Plant (Camellia sinensis)

Table 3

Identification of simple sequence repeats (SSRs) from preliminary BAC-end sequence (BES) of the Camellia sinensis tea BAC library, CSBCBa.

Sequence filename	Type	Motif	No. of repeats	SSR start	SSR end
> _camellia_g1-12-3-07_G11_.g1	di	ac	6	370	381
> _camellia_g1-12-3-07_A01_.g1	di	ag	7	173	186
> _camellia_g1-12-3-07_C10_.g1	di	ag	8	133	148
> _camellia_g1-12-3-07_D02_.g1	di	ag	6	461	472
> _camellia_g1-12-3-07_H02_.g1	di	ag	5	585	594
> _camellia_b1-12-3-07_G05_.b1	di	at	5	306	315
> _camellia_g1-12-3-07_C10_.g1	di	at	6	121	132
> _camellia_g1-12-3-07_D02_.g1	di	at	11	194	215
> _camellia_g1-12-3-07_D08_.g1	di	at	5	388	397
> _camellia_b1-12-3-07_A03_.b1	di	ct	13	358	383
> _camellia_b1-12-3-07_D05_.b1	di	ct	8	1	16
> _camellia_g1-12-3-07_A06_.g1	di	ct	7	208	221
> _camellia_g1-12-3-07_B11_.g1	di	ct	7	310	323
> _camellia_g1-12-3-07_G11_.g1	di	ct	5	287	296
> _camellia_g1-12-3-07_B06_.g1	di	ga	18	516	551
> _camellia_g1-12-3-07_C10_.g1	di	ga	18	586	621
> _camellia_g1-12-3-07_D02_.g1	di	ga	8	538	553
> _camellia_b1-12-3-07_C09_.b1	di	ta	6	124	135
> _camellia_b1-12-3-07_F10_.b1	di	ta	8	29	44
> _camellia_b1-12-3-07_G12_.b1	di	ta	11	437	458
> _camellia_g1-12-3-07_D03_.g1	di	ta	5	555	564
> _camellia_b1-12-3-07_A03_.b1	di	tc	8	314	329
> _camellia_g1-12-3-07_B06_.g1	di	tg	6	505	516
> _camellia_b1-12-3-07_H09_.b1	tri	aat	5	197	211
> _camellia_g1-12-3-07_D02_.g1	penta	gagat	9	556	600