Characteristics of Highly Polymorphic Segmental Copy-Number Variations Observed in Japanese by BAC-Array-CGH

Table 1

Summary of highly polymorphic CNVs detected.

Clone number	Chrom.; Number	Position (Mb)	Variant^%		Known (K); or Novel (N)^$	Segmental Duplication*	Data of Redon
			Gain	Loss			[18]^#
RP11-259N12	1	103.8	10	48	K	P	P
RP11-89B17	2	132.1	24	0	K	P	P
RP11-11M9	4	19.1	0	15	N	A	A
RP11-231J7	4	158.7	0	23	N	A	A
RP11-88L18	5	17.5	28	33	K	P	P
RP11-90A9	5	79.9	57	3	K	P	A
RP1-299C21	6	103.8	4	79	K	A	P
RP11-121A8	7	38.0	13	0	K	P	A
RP11-89B15	7	15.4	0	17	N	A	A
RP11-90G23	8	86.7	0	51	K	P	P
RP11-95J4	9	112.9	11	0	K	A	P
RP11-100C24	13	56.6	38	22	K	P	P
RP11-115G22	15	30.3	72	0	K	P	P
RP11-79O18	17	42.1	26	0	K	P	P
CTD-2100F13	18	19.3	14	0	K	A	A
RP11-79F15	19	8.7	85	7	K	P	P

^% Number of individuals with CNVs.
^$ Known (K). The CNVs are already known by the published reports. Novel (N), The CNVs are not reported previously.
*P: Present, A: Absent. P means that the presence of segmental duplications are reported in the “Database of Genomic Variants’’ made by The Centre for
Applied Genomics, or A means that those are not reported in the database.
^# P means that our CNVs present in BAC-array data from Redon et al. [18]. A means that the CNVs absent in the data.