Table 1: Top twenty regulator-module interactions as given by the union method. *Records represent true positives at the 𝑃 value threshold of 0.05.

RankRegulator-module 𝑃 valueRanks from individual algorithms
LIMMALeMoNeInferelator

1DAL80-11* 3 . 4 7 𝑒 1 0 113088
IME4-46 1 . 0 0 𝑒 + 0 0 4812906
HAP1-13 1 . 0 0 𝑒 + 0 0 30761691

4HAP4-7* 1 . 6 7 𝑒 3 0 5092
MET32-11* 1 . 2 1 𝑒 1 3 2307
DAL80-51* 0 . 0 0 𝑒 + 0 0 4210281

7PHD1-36* 5 . 2 0 𝑒 0 3 33425
HAP4-30 5 . 3 3 𝑒 0 2 23332
MET32-27 1 . 0 0 𝑒 + 0 0 968037023

10TOS8-24* 1 . 4 5 𝑒 0 2 494111
GAT1-59* 2 . 5 5 𝑒 0 3 80250594

12XBP1-10* 1 . 0 8 𝑒 0 2 595602
DAL82-48 1 . 0 0 𝑒 + 0 0 5497771

14UGA3-11 2 . 3 5 𝑒 0 1 650959
USV1-28 1 . 0 0 𝑒 + 0 0 190610281
SKO1-57 1 . 0 0 𝑒 + 0 0 4663100266

17GAT1-11* 4 . 2 4 𝑒 0 5 34728
ACA1-48 1 . 0 0 𝑒 + 0 0 710487773

19PDR3-13 3 . 9 0 𝑒 0 1 12810281
DAL80-40 1 . 0 0 𝑒 + 0 0 836727