An Integrative Approach to Infer Regulation Programs in a Transcription Regulatory Module Network

Table 2

Top twenty regulator-module interactions as given by the weighted rank aggregation method. *Records represent true positives at the 𝑃 value threshold of 0.05.

Rank	Regulator-module	𝑃 value	Ranks from individual algorithms
			LIMMA	LeMoNe	Inferelator
1	HAP4-7*	1.67𝑒−30	50	9	2
2	GAT1-11*	4.24𝑒−05	34	7	28
3	MET28-11*	5.92𝑒−10	27	24	16
4	HAP4-30	5.33𝑒−02	23	3	32
5	MET32-11*	1.21𝑒−13	2	30	7
6	DAL80-51*	0.00𝑒+00	4	2	10281
7	DAL81-6	6.67𝑒−01	21	14	1193
8	PDR3-13	3.90𝑒−01	12	8	10281
9	PHD1-36*	5.20𝑒−03	3	342	5
10	IME4-46	1.00𝑒+00	48	1	2906
11	TOS8-24*	1.45𝑒−02	49	4	111
12	GAL80-41*	7.45𝑒−09	7107	10	52
13	DAL81-55	4.17𝑒−01	14	16	285
14	MET32-40*	1.00𝑒−02	52	5329	37
15	CUP2-10*	1.12𝑒−02	553	32	18
16	YAP5-51	1.00𝑒+00	37	746	40
17	XBP1-10*	1.08𝑒−02	59	5	602
18	YAP6-25	8.63𝑒−02	26	26	5444
19	UGA3-40	1.00𝑒+00	22	33	93
20	UGA3-11	2.35𝑒−01	6	509	59