An Integrative Approach to Infer Regulation Programs in a Transcription Regulatory Module Network

Table 3

Top twenty regulator-module interactions as given by the intersection method. *Records represent true positives at the 𝑃 value threshold of 0.05.

Rank	Regulator-module	𝑃 value	Ranks from individual algorithms
			LIMMA	LeMoNe	Inferelator
1	MET28-11*	5.92𝑒−10	27	24	16
2	MET32-11*	1.21𝑒−13	2	30	7
3	HAP4-30	5.33𝑒−02	23	3	32
4	GAT1-11*	4.24𝑒−05	34	7	28
5	HAP4-7*	1.67𝑒−30	50	9	2
6	OAF1-22	5.37𝑒−02	73	45	87
7	UGA3-40	1.00𝑒+00	22	33	93
8	TOS8-24*	1.45𝑒−02	49	4	111
9	DAL80-11*	3.47𝑒−10	1	130	88
10	GAL4-22*	7.44𝑒−03	155	85	115
11	MET32-51	1.00𝑒+00	28	224	113
12	RDS2-16	1.00𝑒+00	219	125	273
13	YRR1-24*	4.06𝑒−04	273	21	230
14	DAL81-55	4.17𝑒−01	14	16	285
15	GZF3-11*	8.34𝑒−04	31	188	297
16	TOS8-49	5.55𝑒−02	87	308	85
17	SWI4-55	3.67𝑒−01	39	63	310
18	DAL81-58	1.00𝑒+00	199	310	190
19	BAS1-63	1.00𝑒+00	33	88	312
20	IME4-3	4.52𝑒−01	317	58	245