Table 3: Top twenty regulator-module interactions as given by the intersection method. *Records represent true positives at the 𝑃 value threshold of 0.05.

RankRegulator-module 𝑃 valueRanks from individual algorithms
LIMMALeMoNeInferelator

1MET28-11* 5 . 9 2 𝑒 1 0 272416
2MET32-11* 1 . 2 1 𝑒 1 3 2307
3HAP4-30 5 . 3 3 𝑒 0 2 23332
4GAT1-11* 4 . 2 4 𝑒 0 5 34728
5HAP4-7* 1 . 6 7 𝑒 3 0 5092
6OAF1-22 5 . 3 7 𝑒 0 2 734587
7UGA3-40 1 . 0 0 𝑒 + 0 0 223393
8TOS8-24* 1 . 4 5 𝑒 0 2 494111
9DAL80-11* 3 . 4 7 𝑒 1 0 113088
10GAL4-22* 7 . 4 4 𝑒 0 3 15585115
11MET32-51 1 . 0 0 𝑒 + 0 0 28224113
12RDS2-16 1 . 0 0 𝑒 + 0 0 219125273
13YRR1-24* 4 . 0 6 𝑒 0 4 27321230
14DAL81-55 4 . 1 7 𝑒 0 1 1416285
15GZF3-11* 8 . 3 4 𝑒 0 4 31188297
16TOS8-49 5 . 5 5 𝑒 0 2 8730885
17SWI4-55 3 . 6 7 𝑒 0 1 3963310
18DAL81-58 1 . 0 0 𝑒 + 0 0 199310190
19BAS1-63 1 . 0 0 𝑒 + 0 0 3388312
20IME4-3 4 . 5 2 𝑒 0 1 31758245