Research Article
Codon Preference Optimization Increases Prokaryotic Cystatin C Expression
Table 1
Sequence comparison between wt- and co-cysC genes.
| aa | S | S | P | G | K | P | P | R | L | V | G | G | P | M | D | A | S | V | E | E | co | TCT | TCT | CCG | GGT | AAA | CCG | CCG | CGT | CTG | GTT | GGT | GGT | CCG | ATG | GAC | GCT | TCT | GTT | GAA | GAA | wt | TCC | AGT | CCC | GGC | AAG | CCG | CCG | CGC | CTA | GTG | GGA | GGC | CCC | ATG | GAC | GCC | AGC | GTG | GAG | GAG | | | | | | | | | | | | | | | | | | | | | | aa | E | G | V | R | R | A | L | D | F | A | V | G | E | Y | N | K | A | S | N | D | co | GAA | GGT | GTT | CGT | CGT | GCT | CTG | GAC | TTC | GCT | GTT | GGT | GAA | TAC | AAC | AAA | GCT | TCT | AAC | GAC | wt | GAG | GGT | GTG | CGG | CGT | GCA | CTG | GAC | TTT | GCC | GTC | GGC | GAG | TAC | AAC | AAA | GCC | AGC | AAC | GAC | | | | | | | | | | | | | | | | | | | | | | aa | M | Y | H | S | R | A | L | Q | V | V | R | A | R | K | Q | I | V | A | G | V | co | ATG | TAC | CAC | TCT | CGT | GCT | CTG | CAG | GTT | GTT | CGT | GCT | CGT | AAA | CAG | ATC | GTT | GCT | GGT | GTT | wt | ATG | TAC | CAC | AGC | CGC | GCG | CTG | CAG | GTG | GTG | CGC | GCC | CGC | AAG | CAG | ATC | GTA | GCT | GGG | GTG | | | | | | | | | | | | | | | | | | | | | | aa | N | Y | F | L | D | V | E | L | G | R | T | T | C | T | K | T | Q | P | N | L | co | AAC | TAC | TTC | CTG | GAC | GTT | GAA | CTG | GGT | CGT | ACC | ACC | TGC | ACC | AAA | ACC | CAG | CCG | AAC | CTG | wt | AAC | TAC | TTC | TTG | GAC | GTG | GAG | CTG | GGC | CGA | ACC | ACG | TGT | ACC | AAG | ACC | CAG | CCC | AAC | TTG | | | | | | | | | | | | | | | | | | | | | | aa | D | N | C | P | F | H | D | Q | P | H | L | K | R | K | A | F | C | S | F | Q | co | GAC | AAC | TGC | CCG | TTC | CAC | GAC | CAG | CCG | CAC | CTG | AAA | CGT | AAA | GCT | TTC | TGC | TCT | TTC | CAG | wt | GAC | AAC | TGC | CCC | TTC | CAT | GAC | CAG | CCA | CAT | CTG | AAA | AGG | AAA | GCA | TTC | TGC | TCT | TTC | CAG | | | | | | | | | | | | | | | | | | | | | | aa | I | Y | A | V | P | W | Q | G | T | M | T | L | S | K | S | T | C | Q | D | A | co | ATC | TAC | GCT | GTT | CCG | TGG | CAG | GGT | ACC | ATG | ACC | CTG | TCT | AAA | TCT | ACC | TGC | CAG | GAC | GCT | wt | ATC | TAC | GCT | GTG | CCT | TGG | CAG | GGC | ACA | ATG | ACC | TTG | TCG | AAA | TCC | ACC | TGT | CAG | GAC | GCC |
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Note: wt: wild-type; co: codon-optimized; aa: amino acid.
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