Inference of Tumor Phylogenies from Genomic Assays on Heterogeneous Samples

Table 4

Marker regions amplified simultaneously during tumor evolution. The table provides, for each such set of marker regions, a unique identifier, cytogenetic coordinates, and corresponding specific edges or paths in the phylogenetic tree.

Coamplified markers	Phylogeny edges
18q21.32-18q22.2,18q21.2-18q21.3	12→ C2
1q32.1-1q32.2,1q44	11 →10
5q21.1-5q21.3, 5q22.3-5q23.1	11 → C6, 8 → C4
8q12.3-8q13.2,8q13.2-8q13.3,8q21.11-8q24.3	11 →10
20q13.12,20q13.2-20q13.32,20q13.33	10 → 9
7q31.2-7q31.31	9 → C3
15q25.2-15q25.3,15q26.3	8 → C4
17q11.2,17q12-17q21.2,17q21.33	11→ C6, 9 → 8