Research Article
Phylogeny, Functional Annotation, and Protein Interaction Network Analyses of the Xenopus tropicalis Basic Helix-Loop-Helix Transcription Factors
Table 3
Significant pathways identified by KOBAS with 93 Xenopus tropicalis bHLH transcription factors.
| Term | Pathway database | Database ID | Sample gene number | Background number | P value | Corrected P value | Genes |
| Circadian rhythm: mammal | KEGG | xtr04710 | 3 | 21 | | 0.0001219 | XSBmal2; XSDec2; XSClock | TGF-beta signaling pathway | KEGG | xtr04350 | 4 | 73 | | 0.0001219 | XSId3; XSId2; XSId4; XSnMyc | Notch signaling pathway | PANTHER | P00045 | 2 | 5 | 0.0004516 | 0.0024084 | XSHes1a; XSHes1b; XSHerp1 | Notch signaling pathway | KEGG | xtr04330 | 2 | 43 | 0.0037667 | 0.0150668 | XSHes1a; XSHes1b; XSHes5a | Developmental biology | Reactome | None | 2 | 106 | 0.0145401 | 0.0398896 | XSHes1a; XSHes1b; XSNDF1; XSNDF2 | Circadian clock | Reactome | None | 1 | 8 | 0.0149586 | 0.0398896 | XSClock | Herpes simplex infection | KEGG | xtr05168 | 2 | 128 | 0.0304156 | 0.0695215 | XSBmal2; XSClock | MAPK signaling pathway | KEGG | xtr04010 | 2 | 220 | 0.0802242 | 0.1604484 | XSMAX; XSnMyc | Fanconi anemia pathway | KEGG | xtr03460 | 1 | 51 | 0.1044307 | 0.1856547 | XSHes1a; XSHes1b | ErbB signaling pathway | KEGG | xtr04012 | 1 | 70 | 0.1406256 | 0.2250009 | XSnMyc | Melanogenesis | KEGG | xtr04916 | 1 | 86 | 0.1700261 | 0.2386888 | XSMITF | Jak-STAT signaling pathway | KEGG | xtr04630 | 1 | 91 | 0.1790166 | 0.2386888 | XSnMyc | Metabolism | Reactome | None | 2 | 458 | 0.206835 | 0.2544026 | XSSRC2; XSSRC1 | Cell cycle | KEGG | xtr04110 | 1 | 116 | 0.2226023 | 0.2544026 | XSnMyc | Wnt signaling pathway | KEGG | xtr04310 | 1 | 131 | 0.2476916 | 0.2642044 | XSnMyc | Wnt signaling pathway | PANTHER | P00057 | 1 | 37 | 0.2756772 | 0.2756772 | XSvMyc |
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