Analysis of Structures and Epitopes of Surface Antigen Glycoproteins Expressed in Bradyzoites of Toxoplasma gondii

Table 2

Parameters for predicted best 3-D model.

Name	C-score^a	TM-score^b	RMSD^b	No. of decoys^c	Cluster density^d
SAG2C	−2.18	0.46 ± 0.15	11.8 ± 4.5	460	0.0285
SAG2D	−1.45	0.54 ± 0.15	8.5 ± 4.5	4662	0.0842
SAG2X	−2.22	0.45 ± 0.15	11.9 ± 4.4	455	0.0280
SAG2Y	−1.59	0.52 ± 0.15	9.9 ± 4.6	2877	0.0525

aC-score is a confidence score for estimating the quality of predicted models by I-TASSER. C-score is typically in the range of [−5, 2], where a C-score of higher value signifies a model with a high confidence and vice versa.
^bTM-score and RMSD are known standards for measuring structural similarity between two structures which are usually used to measure the accuracy of structure modeling when the native structure is known.
^cNumber of decoys represents the number of structural decoys that are used in generating each model.
^dCluster density represents the density of cluster.