Analysis of Structures and Epitopes of Surface Antigen Glycoproteins Expressed in Bradyzoites of Toxoplasma gondii

Table 4

Similarity between SAG2C, -2D, -2X, -2Y and top identified structural analogs BSR4 protein.

Protein model	TM-score^a	RMSD^b	IDEN^c	Cov.^d
SAG2A	0.583	1.20	0.244	0.596
SAG2B	0.661	2.42	0.167	0.755
SAG2C	0.673	1.68	0.179	0.698
SAG2D	0.670	2.85	0.194	0.763

aTM-score of the structural alignment between the query structure and known structures in the PDB library.
^bRMSD is the RMSD between residues that are structurally aligned by TM-align.
^cIDEN is the percentage sequence identity in the structurally aligned region.
^dCov. represents the coverage of the alignment by TM-align and is equal to the number of structurally aligned residues divided by length of the query protein.