Review Article
The World Bacterial Biogeography and Biodiversity through Databases: A Case Study of NCBI Nucleotide Database and GBIF Database
Algorithm 1
Biodiversity and biogeography—GBIF_Filter.
Definition part: | Bacteria phyla (bacteria_main_groups) | // all variables are set at zero (0) or an empty list | Define treatments and operations: | Retrieve and set the classification used from the directory | “Classification_2000_Plus”, see supplementary materials directory. | Retrieve data from each geographical area fond in the directory | “GBIF_Plus”, see supplementary materials and filter and assign them to their | respective phyla. | Write the occurrences in the file “gbif_Classification_2000_Plus.txt”, see | supplementary materials. | Unclassified taxa are saved in the file. | “absent_taxa_Classification_2000_Plus.txt” and | “absent_taxa_Classification_2000_Plus_ex_All.txt” see supplementary | materials. |
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