BioMed Research International / 2013 / Article / Tab 2 / Research Article
The Complete Exosome Workflow Solution: From Isolation to Characterization of RNA Cargo Table 2 RNA representation in exosomes versus cell-free parental serum: top 10 RNA transcripts organized by RNA type. Values for cell-free serum and exosome preparations represent mean counts of mapped reads to reference transcripts from replicate samples prepared from a single donor. Accession numbers and gene symbols were obtained from NCBI RefSeq annotation.
(a) āmiRBase ID Serum miRBase ID Exosomes hsa-mir-1246 5222.5 hsa-mir-1246 2145.0 hsa-mir-451 2163.5 hsa-mir-451 1837.0 hsa-mir-2115 77.0 hsa-mir-3934 1444.5 hsa-mir-1281 531.0 hsa-mir-1281 1068.5 hsa-mir-486 337.5 hsa-mir-3180-1 871.0 hsa-mir-16-1 326.0 hsa-mir-4257 851.5 hsa-mir-3180-1 116.5 hsa-mir-181d 687.5 hsa-mir-4257 525.0 hsa-mir-486 593.5 hsa-mir-124-1 136.0 hsa-mir-766 580.5 hsa-mir-3167 293.5 hsa-mir-497 565.0 tRNA ID Serum tRNA ID Exosomes chr6.trna31-SerGCT 801.0 chr6.trna4-ArgTCG 2071.0 chr12.trna10-AspGTC 718.0 chr6.trna31-SerGCT 1867.0 chr6.trna4-ArgTCG 661.5 chr15.trna4-ArgTCG 1010.0 chr15.trna4-ArgTCG 475.0 chr6.trna14-TyrGTA 894.5 chr14.trna19-TyrGTA 364.5 chr14.trna19-TyrGTA 884.5 chr6.trna124-ArgTCG 237.5 chr7.trna7-CysGCA 681.5 chr6.trna14-TyrGTA 223.5 chr1.trna105-GlnCTG 591.0 chr12.trna12-AspGTC 214.0 chr6.trna52-ArgTCT 581.0 chr6.trna145-SerAGA 211.0 chr6.trna124-ArgTCG 565.5 chr6.trna52-ArgTCT 200.5 chr16.trna1-ArgCCG 544.5
(b) āmRNA Accession Serum mRNA Accession Exosomes CCDC96 NM_153376 251.5 CCDC96 NM_153376 606.5 SIRPG NM_080816 240.5 HGSNAT NM_152419 503.0 TBX22 NM_016954 215.0 TBX22 NM_016954 465.0 RNF223 NM_001205252 200.5 SIRPG NM_018556 350.0 SIRPG NM_018556 198.0 SIRPG NM_080816 340.0 NFIX NM_002501 198.0 NFIX NM_002501 338.5 RAP2A NM_021033 174.0 GPR126 NM_198569 288.0 SIRPG NM_001039508 154.0 ILDR2 NM_199351 273.5 HGSNAT NM_152419 143.0 PAPOLB NM_020144 267.5 RBFOX1 NM_001142333 129.5 SIRPG NM_001039508 246.5 ncRNA Accession Serum ncRNA Accession Exosomes RNY4 NR_004393 1043.5 RNY4 NR_004393 704.5 RNY5 NR_001571 477.0 RNY5 NR_001571 262.0 RNY3 NR_004392 360.0 RNY3 NR_004392 174.0 RNY4P8 NR_033356 177.0 FLJ33534 NR_040080 167.0 RNU2-1 NR_002716 159.5 LOC100130673 NR_038454 155.0 RNY1 NR_004391 145.5 LOC100507605 NR_038375 153.0 RNU12 NR_029422 127.5 C20orf173 NR_026933 152.0 C1orf213 NR_033690 101.0 LOC100507605 NR_038374 139.5 RNU5B-1 NR_002757 71.0 LOC644936 NR_004845 136.0 C20orf173 NR_026933 70.5 LOC100507605 NR_038376 130.5