Prokaryotic Phylogenies Inferred from Whole-Genome Sequence and Annotation Data

Table 5

The results of accuracy by different stage combinations on random datasets.

Species no.	1	1 + 2	1 + 3	CGCPhy
50	77.62%	78.56%	93.74%	93.74%
100	77.78%	80.04%	93.37%	94.81%
200	79.67%	81.41%	94.08%	95.49%
300	78.97%	84.16%	93.39%	96.13%
Mean	78.51%	81.04%	93.65%	95.04%
Std	0.0389	0.0564	0.0279	0.0278

1: identifying orthologous genes; 2: eliminating potential HGT genes; 3: measuring conserved gene cluster distance; CGCPhy = 1 + 2 + 3.