Full-Length Genomic Sequence of Subgenotype IIIA Hepatitis A Virus Isolate in Republic of Korea

Table 1

Primer sets used in this study.

	Primer	Sequence (5^′→3^′)	Polarity	Region
Diagnosis primer sets	HAV-F	GGT TTC TAT TCA GAT TGC AAA TTA	+	2873–2889
	HAV- R	AGT AAA AAC TCC AGC ATC CAT TTC	−	3357–3380
Designed primer sets	HAV-1F	GCC TAG GCT ATA GGC TAA AT	+	79–98
	HAV-1R	CGT TCC CAA CAT CTG TGT	−	304–321
	HAV-2F	GTT GTA AAT ATT AAT TCC TGC AGG	+	124–147
	HAV-2R	CAG ACA ATC CAC TTA ATG CAT	−	510–530
	HAV-3F	CTA TGA AGA GAT GCT TTG GAT	+	412–432
	HAV-3R	TGT ATC TCA ATT CCA AAT CTT GC	−	1095–1117
	HAV-4F	ATT CAT TCT GCT GAY TGG TTG	+	972–992
	HAV-4R	CAA CTG GRA TAA CCT TGA TCT	−	1675–1695
	HAV-5F	AGG AAG ATT GGA AAT CTG ATG	+	1549–1569
	HAV-5R	TTC ACT GTT GTA ATR CCA ACT TG	−	2253–2275
	HAV-6F	CAA GTT GGC ATT ACA ACA GTG	+	2253–2273
	HAV-6R	GAG CAA TTC TAT CCA TCA TTG	−	3010–3030
	HAV-7F	GAA ATG GAT GCT GGA GTT TTT ACT	+	3357–3380
	HAV-7R	CTG AAC ARA TAT CYC TAA GCC	−	3991–4011
	HAV-8F	GTT GAG AGT GAT GAA TTA TGC	+	3851–3871
	HAV-8R	YTG TCC ACT ATA TCC ATC CCA	−	4521–4541
	HAV-9F	AAT GGT GMC AAG ATG TGA GCC	+	4364–4384
	HAV-9R	AAC TGC AAC CCA CTT RTG RTT	−	5091–5111
	HAV-10F	GGG ATT ATC AGA TGA TGA CAA	+	4982–5002
	HAV-10R	TAC CTC TCC ARG CTT GAT CAA	−	5743–5763
	HAV-11F	GGA CTC CAA TGT TAA TTT CAG	+	5647–5667
	HAV-11R	TCC ATA TTR ATT GCA TCT ATC CC	−	6234–6256
	HAV-12F	GAT GAG CCA GAT GAT TAT AAA GA	+	6120–6142
	HAV-12R	AGA AGG CAT TGA MCC ACA TAC	−	6819–6839
	HAV-13F	GTA TGT GGK TCA ATG CCT TCT	+	6819–6839
	HAV-13R	WAT TTA CTG AAA AGA YAA AAT AAA CAA AC	−	7436–7466