Full-Length Genomic Sequence of Subgenotype IIIA Hepatitis A Virus Isolate in Republic of Korea

Table 2

Percent identity between the Kor-HAV-F and the strains belonging to other genotypes, at the nucleotide and amino acid levels.

Protein	IA				IB				IIA		IIB		IIIA				IIIB				V
	GBM/WT		H2		HM-175		HAF-203		CF53/Berne		SLF88		NOR-21		GBS-IND		HAJ85-1		HA-JNG06-90F		AGM-27
	(1976)		(2007)		(1976)		(1992)		(1979)		(1988)		(1997)		(2010)		(1985)		(1990)		(1985)
	NT	AA	NT	AA	NT	AA	NT	AA	NT	AA	NT	AA	NT	AA	NT	AA	NT	AA	NT	AA	NT	AA
P1	83.1	96.7	83.3	97.0	83.0	97.2	82.9	96.6	82.4	97.0	82.8	97.3	98.4	99.9	95.2	99.1	89.0	99.1	88.7	99.0	80.7	94.8
VP4	95.7	95.7	95.7	95.7	95.7	100.0	95.7	100.0	95.7	100.0	94.2	100.0	99.6	100.0	98.6	95.7	97.1	100.0	97.1	100.0	94.2	95.7
VP2	84.8	98.0	84.6	97.6	84.0	98.4	84.0	98.0	83.6	96.7	83.5	97.6	98.3	100.0	95.4	99.6	89.7	100.0	88.0	99.1	82.8	85.5
VP3	82.6	98.2	83.2	98.6	82.7	98.2	82.7	98.2	81.2	98.6	82.6	98.6	98.9	100.0	94.1	99.1	88.3	99.1	89.2	100.0	81.4	97.7
VP1	81.2	94.7	81.3	95.3	81.4	95.3	81.2	94.0	81.3	95.7	81.7	96.0	98.1	99.7	95.4	99.0	88.4	98.3	88.3	98.0	77.4	92.0
P2	81.4	93.2	80.8	93.2	81.2	93.3	81.0	92.4	81.9	92.6	82.3	94.0	98.5	99.9	95.6	99.5	86.8	98.4	86.7	99.0	79.0	89.4
P2A	81.7	92.6	80.1	91.0	80.6	92.1	80.6	91.5	82.5	93.7	82.2	94.2	98.1	99.5	94.7	98.9	86.2	97.9	86.4	97.9	78.0	87.3
P2B	80.7	94.4	81.9	95.3	81.0	95.3	80.4	92.5	81.6	91.6	82.6	93.5	98.8	100.0	93.1	100.0	88.5	99.1	87.2	99.1	80.1	91.6
P2C	81.5	93.1	80.8	93.7	81.7	93.4	81.5	92.8	81.7	92.2	82.2	94.0	98.7	99.7	96.9	99.7	86.7	98.5	86.7	98.5	79.2	89.9
P3	81.7	91.9	82.8	92.3	82.7	92.0	82.7	91.8	82.6	91.8	82.4	92.0	99.3	100.0	96.9	99.9	89.7	98.0	89.8	98.0	81.9	91.4
P3A	74.8	79.7	75.7	85.1	75.7	85.1	75.7	95.1	76.9	84.7	76.1	85.1	99.1	100.0	94.1	100.0	87.4	93.2	88.3	91.9	75.5	86.1
P3B	79.7	95.7	79.7	100.0	78.3	100.0	76.8	95.7	87.0	100.0	85.5	100.0	100.0	100.0	95.7	100.0	85.5	100.0	85.5	100.0	82.6	95.7
P3C	83.1	97.3	84.3	97.7	84.2	97.7	84.2	97.7	84.3	98.6	84.3	97.7	99.1	100.0	96.7	100.0	89.5	100.0	90.0	100.0	81.8	96.4
P3D	82.2	90.0	83.4	90.8	83.4	90.4	83.4	90.2	82.5	89.6	82.3	90.4	99.4	100.0	97.5	99.8	90.3	97.8	90.2	98.0	82.6	89.8