ASPic-GeneID: A Lightweight Pipeline for Gene Prediction and Alternative Isoforms Detection

Figure 2

Relationship between ASPIC and GeneID predictions. ASPIC predicts both introns and full-length transcripts. When ASPIC introns are given to GeneID, we obtain ASPIC-GeneID predictions without alternative splicing. In contrast, when ASPIC transcripts are used, we can predict alternative variants in two ways. The first combining ASPIC transcripts and nonoverlapping ASPIC-GeneID predictions and the second giving ASPIC transcripts to GeneID as evidence and then removing redundant predictions.